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GWAS Study

Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24.

Birnbaum S, Ludwig KU, Reutter H et al.

19270707 PubMed ID
GWAS Study Type
1807 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

BS
Birnbaum S
LK
Ludwig KU
RH
Reutter H
HS
Herms S
SM
Steffens M
RM
Rubini M
BC
Baluardo C
FM
Ferrian M
AD
Almeida de Assis N
AM
Alblas MA
BS
Barth S
FJ
Freudenberg J
LC
Lauster C
SG
Schmidt G
SM
Scheer M
BB
Braumann B
BS
Bergé SJ
RR
Reich RH
SF
Schiefke F
HA
Hemprich A
PS
Pötzsch S
SR
Steegers-Theunissen RP
PB
Pötzsch B
MS
Moebus S
HB
Horsthemke B
KF
Kramer FJ
WT
Wienker TF
MP
Mossey PA
PP
Propping P
CS
Cichon S
HP
Hoffmann P
KM
Knapp M
NM
Nöthen MM
ME
Mangold E
Chapter II

Abstract

Summary of the research findings

We conducted a genome-wide association study involving 224 cases and 383 controls of Central European origin to identify susceptibility loci for nonsyndromic cleft lip with or without cleft palate (NSCL/P). A 640-kb region at chromosome 8q24.21 was found to contain multiple markers with highly significant evidence for association with the cleft phenotype, including three markers that reached genome-wide significance. The 640-kb cleft-associated region was saturated with 146 SNP markers and then analyzed in our entire NSCL/P sample of 462 unrelated cases and 954 controls. In the entire sample, the most significant SNP (rs987525) had a P value of 3.34 x 10(-24). The odds ratio was 2.57 (95% CI = 2.02-3.26) for the heterozygous genotype and 6.05 (95% CI = 3.88-9.43) for the homozygous genotype. The calculated population attributable risk for this marker is 0.41, suggesting that this study has identified a major susceptibility locus for NSCL/P.

224 European ancestry cases, 383 European ancestry controls

Chapter III

Study Statistics

Key metrics and study information

1807
Total Participants
GWAS
Study Type
Yes
Replicated
246 cases, 954 controls
Replication Participants
European
Ancestry
Germany
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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Analysis In Progress

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