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GWAS Study

Common CYP7A1 promoter polymorphism associated with risk of neuromyelitis optica.

Kim HJ, Park HY, Kim E et al.

19850125 PubMed ID
GWAS Study Type
330 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

KH
Kim HJ
PH
Park HY
KE
Kim E
LK
Lee KS
KK
Kim KK
CB
Choi BO
KS
Kim SM
BJ
Bae JS
LS
Lee SO
CJ
Chun JY
PT
Park TJ
CH
Cheong HS
JI
Jo I
SH
Shin HD
Chapter II

Abstract

Summary of the research findings

Neuromyelitis optica (NMO) is a severe idiopathic inflammatory disease of the central nervous system primarily affecting the optic nerves and spinal cord. In this study, we generated genome-wide SNP data from NMO patients and normal controls (53 cases and 240 controls), and followed up on the association signals with samples from a larger number of inflammatory demyelinating diseases, including NMO (n=93), multiple sclerosis (MS, n=71), idiopathic recurrent transverse myelitis (IRTM, n=57), and normal controls (n=240). Statistical analyses revealed that a common promoter SNP in CYP7A1 has a protective/gene dose-dependent effect on the risk of NMO (P=0.0004). A stronger association between the variables and subsequently, a higher protective effect (lower OR) on the risk of NMO were observed among patients carrying the "G/G" genotype of rs3808607 than those with the "T/G" genotype (OR=0.38/P=0.01 vs. OR=0.12/P=0.0004, respectively). The associations which were only observed in patients with NMO suggest that there are differences in the genetic etiology of the inflammatory demyelinating diseases (NMO, classical MS, and IRTM).

53 Korean ancestry cases, 240 Korean ancestry controls

Chapter III

Study Statistics

Key metrics and study information

330
Total Participants
GWAS
Study Type
Yes
Replicated
37 Korean ancestry cases
Replication Participants
East Asian
Ancestry
Republic of Korea
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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