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GWAS Study

A genome-wide association analysis implicates SOX6 as a candidate gene for wrist bone mass.

Tan L, Liu R, Lei S et al.

21104366 PubMed ID
GWAS Study Type
2628 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

TL
Tan L
LR
Liu R
LS
Lei S
PR
Pan R
YT
Yang T
YH
Yan H
PY
Pei Y
YF
Yang F
ZF
Zhang F
PF
Pan F
ZY
Zhang Y
HH
Hu H
LS
Levy S
DH
Deng H
Chapter II

Abstract

Summary of the research findings

Osteoporosis is a highly heritable common bone disease leading to fractures that severely impair the life quality of patients. Wrist fractures caused by osteoporosis are largely due to the scarcity of wrist bone mass. Here we report the results of a genome-wide association study (GWAS) of wrist bone mineral density (BMD). We examined ∼500000 SNP markers in 1000 unrelated homogeneous Caucasian subjects and found a novel allelic association with wrist BMD at rs11023787 in the SOX6 (SRY (sex determining region Y)-box 6) gene (P=9.00×10(-5)). Subjects carrying the C allele of rs11023787 in SOX6 had significantly higher mean wrist BMD values than those with the T allele (0.485:0.462 g cm(-2) for C allele vs. T allele carriers). For validation, we performed SOX6 association for BMD in an independent Chinese sample and found that SNP rs11023787 was significantly associated with wrist BMD in the Chinese sample (P=6.41×10(-3)). Meta-analyses of the GWAS scan and the replication studies yielded P-values of 5.20×10(-6) for rs11023787. Results of this study, together with the functional relevance of SOX6 in cartilage formation, support the SOX6 gene as an important gene for BMD variation.

1,000 European ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

2628
Total Participants
GWAS
Study Type
Yes
Replicated
1,628 Chinese ancestry individuals
Replication Participants
European, East Asian
Ancestry
U.S., China
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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