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GWAS Study

A genome-wide association study of hepatitis B vaccine response in an Indonesian population reveals multiple independent risk variants in the HLA region.

Png E, Thalamuthu A, Ong RT et al.

21764829 PubMed ID
GWAS Study Type
3614 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

PE
Png E
TA
Thalamuthu A
OR
Ong RT
SH
Snippe H
BG
Boland GJ
SM
Seielstad M
Chapter II

Abstract

Summary of the research findings

We performed a two-stage genome-wide association study (GWAS) of antibody titer in 3614 hepatitis B vaccine recipients from Indonesia's Riau Archipelago, leading to the identification of at least three independent signals within the human leukocyte antigen (HLA) complex. These appear to implicate HLA-DR [rs3135363; P= 6.53 × 10(-22); odds ratio (OR) = 1.53, 95% confidence interval (CI) = 1.35-1.74]; HLA-DP, previously associated with the risk of chronic hepatitis B infection (rs9277535; P= 2.91 × 10(-12); OR = 0.72, 95% CI = 0.63-0.81); and a gene rich HLA Class III interval (rs9267665; P = 1.24 × 10(-17); OR = 2.05, CI = 1.64-2.57). The substantial overlap of these variants and those identified by GWAS of chronic hepatitis B infection confirms vaccine response as a model for infection, while suggesting that the vaccine is least effective in those most at risk of lifelong infection, following exposure to the virus.

1,683 Indonesian ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

3614
Total Participants
GWAS
Study Type
Yes
Replicated
1,931 Indonesian ancestry individuals
Replication Participants
Asian unspecified
Ancestry
Indonesia
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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