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GWAS Study

Genome-wide association study identifies HMGN3 locus for spine bone size variation in Chinese.

Lei SF, Shen H, Yang TL et al.

21947420 PubMed ID
GWAS Study Type
3355 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

LS
Lei SF
SH
Shen H
YT
Yang TL
GY
Guo Y
DS
Dong SS
XX
Xu XH
DF
Deng FY
TQ
Tian Q
LY
Liu YJ
LY
Liu YZ
LJ
Li J
DH
Deng HW
Chapter II

Abstract

Summary of the research findings

Bone size (BS) is one of the major risk factors for osteoporotic fractures. BS variation is genetically determined to a substantial degree with heritability over 50%, but specific genes underlying variation of BS are still largely unknown. To identify specific genes for BS in Chinese, initial genome-wide association scan (GWAS) study and follow-up replication study were performed. In initial GWAS study, a group of 12 contiguous single-nucleotide polymorphism (SNP)s, which span a region of ~25 kb and locate at the upstream of HMGN3 gene (high-mobility group nucleosomal binding domain 3), achieved moderate association signals for spine BS, with P values ranging from 6.2E-05 to 1.8E-06. In the follow-up replication study, eight of the 12 SNPs were detected suggestive replicate associations with BS in 1,728 unrelated female Caucasians, which have well-known differences from Chinese in ethnic genetic background. The SNPs in the region of HMGN3 gene formed a tightly combined haplotype block in both Chinese and Caucasians. The results suggest that the genomic region containing HMGN3 gene may be associated with spine BS in Chinese.

1,627 Han Chinese ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

3355
Total Participants
GWAS
Study Type
Yes
Replicated
1,728 European ancestry female individuals
Replication Participants
East Asian, European
Ancestry
China, U.S.
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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