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GWAS Study

Interleukin 28B polymorphisms are the only common genetic variants associated with low-density lipoprotein cholesterol (LDL-C) in genotype-1 chronic hepatitis C and determine the association between LDL-C and treatment response.

Clark PJ, Thompson AJ, Zhu M et al.

22497812 PubMed ID
GWAS Study Type
1319 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

CP
Clark PJ
TA
Thompson AJ
ZM
Zhu M
VD
Vock DM
ZQ
Zhu Q
GD
Ge D
PK
Patel K
HS
Harrison SA
UT
Urban TJ
NS
Naggie S
FJ
Fellay J
TH
Tillmann HL
SK
Shianna K
NS
Noviello S
PL
Pedicone LD
ER
Esteban R
KP
Kwo P
SM
Sulkowski MS
AN
Afdhal N
AJ
Albrecht JK
GD
Goldstein DB
MJ
McHutchison JG
MA
Muir AJ
Chapter II

Abstract

Summary of the research findings

Low-density lipoprotein cholesterol (LDL-C) levels and interleukin 28B (IL28B) polymorphism are associated with sustained viral response (SVR) to peginterferon/ribavirin (pegIFN/RBV) for chronic hepatitis C (CHC) infection. IL28B has been linked with LDL-C levels using a candidate gene approach, but it is not known whether other genetic variants are associated with LDL-C, nor how these factors definitively affect SVR. We assessed genetic predictors of serum lipid and triglyceride levels in 1604 patients with genotype 1 (G1) chronic hepatitis C virus (HCV) infection by genome-wide association study and developed multivariable predictive models of SVR. IL28B polymorphisms were the only common genetic variants associated with pretreatment LDL-C level in Caucasians (rs12980275, P = 4.7 × 10(-17), poor response IL28B variants associated with lower LDL-C). The association was dependent on HCV infection, IL28B genotype was no longer associated with LDL-C in SVR patients after treatment, while the association remained significant in non-SVR patients (P < 0.001). LDL-C was significantly associated with SVR for heterozygous IL28B genotype patients (P < 0.001) but not for homozygous genotypes. SVR modelling suggested that IL28B heterozygotes with LDL-C > 130 mg/dL and HCV RNA ≤600 000 IU/mL may anticipate cure rates >80%, while the absence of these two criteria was associated with an SVR rate of <35%. IL28B polymorphisms are the only common genetic variants associated with pretreatment LDL-C in G1-HCV. LDL-C remains significantly associated with SVR for heterozygous IL28B genotype patients, where LDL-C and HCV RNA burden may identify those patients with high or low likelihood of cure with pegIFN/RBV therapy.

1,017 European ancestry cases, 207 African American cases, 95 Hispanic cases

Chapter III

Study Statistics

Key metrics and study information

1319
Total Participants
GWAS
Study Type
No
Replicated
African American or Afro-Caribbean, European, Hispanic or Latin American
Ancestry
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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