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GWAS Study

Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.

Liu H, Irwanto A, Fu X et al.

25642632 PubMed ID
GWAS Study Type
24330 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

LH
Liu H
IA
Irwanto A
FX
Fu X
YG
Yu G
YY
Yu Y
SY
Sun Y
WC
Wang C
WZ
Wang Z
OY
Okada Y
LH
Low H
LY
Li Y
LH
Liany H
CM
Chen M
BF
Bao F
LJ
Li J
YJ
You J
ZQ
Zhang Q
LJ
Liu J
CT
Chu T
AA
Andiappan AK
WN
Wang N
NG
Niu G
LD
Liu D
YX
Yu X
ZL
Zhang L
TH
Tian H
ZG
Zhou G
RO
Rotzschke O
CS
Chen S
ZX
Zhang X
LJ
Liu J
ZF
Zhang F
Chapter II

Abstract

Summary of the research findings

Genome-wide association studies (GWAS) have led to the discovery of several susceptibility loci for leprosy with robust evidence, providing biological insight into the role of host genetic factors in mycobacterial infection. However, the identified loci only partially explain disease heritability, and additional genetic risk factors remain to be discovered. We performed a 3-stage GWAS of leprosy in the Chinese population using 8,313 cases and 16,017 controls. Besides confirming all previously published loci, we discovered six new susceptibility loci, and further gene prioritization analysis of these loci implicated BATF3, CCDC88B and CIITA-SOCS1 as new susceptibility genes for leprosy. A systematic evaluation of pleiotropic effects demonstrated a high tendency for leprosy susceptibility loci to show association with autoimmunity and inflammatory diseases. Further analysis suggests that molecular sensing of infection might have a similar pathogenic role across these diseases, whereas immune responses have discordant roles in infectious and inflammatory diseases.

1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases

Chapter III

Study Statistics

Key metrics and study information

24330
Total Participants
GWAS
Study Type
Yes
Replicated
6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls
Replication Participants
East Asian
Ancestry
China
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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