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GWAS Study

Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.

Sun Y, Huang Y, Yin A et al.

25775280 PubMed ID
GWAS Study Type
5643 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

SY
Sun Y
HY
Huang Y
YA
Yin A
PY
Pan Y
WY
Wang Y
WC
Wang C
DY
Du Y
WM
Wang M
LF
Lan F
HZ
Hu Z
WG
Wang G
JM
Jiang M
MJ
Ma J
ZX
Zhang X
MH
Ma H
MJ
Ma J
ZW
Zhang W
HQ
Huang Q
ZZ
Zhou Z
ML
Ma L
LY
Li Y
JH
Jiang H
XL
Xie L
JY
Jiang Y
SB
Shi B
CJ
Cheng J
SH
Shen H
WL
Wang L
YY
Yang Y
Chapter II

Abstract

Summary of the research findings

Nonsyndromic cleft lip with or without a cleft palate (NSCL/P) is among the most common human congenital birth defects and imposes a substantial physical and financial burden on affected individuals. Here, we conduct a case-control-based GWAS followed by two rounds of replication; we include six independent cohorts from China to elucidate the genetic architecture of NSCL/P in Chinese populations. Using this combined analysis, we identify a new locus at 16p13.3 associated with NSCL/P: rs8049367 between CREBBP and ADCY9 (odds ratio=0.74, P=8.98 × 10(-12)). We confirm that the reported loci at 1q32.2, 10q25.3, 17p13.1 and 20q12 are also involved in NSCL/P development in Chinese populations. Our results provide additional evidence that the rs2235371-related haplotype at 1q32.2 could play a more important role than the previously identified causal variant rs642961 in Chinese populations. These findings provide information on the genetic basis and mechanisms of NSCL/P.

858 Chinese ancestry cases, 1,248 Chinese ancestry controls

Chapter III

Study Statistics

Key metrics and study information

5643
Total Participants
GWAS
Study Type
Yes
Replicated
1,663 Chinese ancestry cases, 1,874 Chinese ancestry controls
Replication Participants
East Asian
Ancestry
China
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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