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GWAS Study

Identification of new susceptibility loci for IgA nephropathy in Han Chinese.

Li M, Foo JN, Wang JQ et al.

26028593 PubMed ID
GWAS Study Type
27993 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

LM
Li M
FJ
Foo JN
WJ
Wang JQ
LH
Low HQ
TX
Tang XQ
TK
Toh KY
YP
Yin PR
KC
Khor CC
GY
Goh YF
II
Irwan ID
XR
Xu RC
AA
Andiappan AK
BJ
Bei JX
RO
Rotzschke O
CM
Chen MH
CC
Cheng CY
SL
Sun LD
JG
Jiang GR
WT
Wong TY
LH
Lin HL
AT
Aung T
LY
Liao YH
SS
Saw SM
YK
Ye K
ER
Ebstein RP
CQ
Chen QK
SW
Shi W
CS
Chew SH
CJ
Chen J
ZF
Zhang FR
LS
Li SP
XG
Xu G
ST
Shyong Tai E
WL
Wang L
CN
Chen N
ZX
Zhang XJ
ZY
Zeng YX
ZH
Zhang H
LZ
Liu ZH
YX
Yu XQ
LJ
Liu JJ
Chapter II

Abstract

Summary of the research findings

IgA nephropathy (IgAN) is one of the most common primary glomerulonephritis. Previously identified genome-wide association study (GWAS) loci explain only a fraction of disease risk. To identify novel susceptibility loci in Han Chinese, we conduct a four-stage GWAS comprising 8,313 cases and 19,680 controls. Here, we show novel associations at ST6GAL1 on 3q27.3 (rs7634389, odds ratio (OR)=1.13, P=7.27 × 10(-10)), ACCS on 11p11.2 (rs2074038, OR=1.14, P=3.93 × 10(-9)) and ODF1-KLF10 on 8q22.3 (rs2033562, OR=1.13, P=1.41 × 10(-9)), validate a recently reported association at ITGAX-ITGAM on 16p11.2 (rs7190997, OR=1.22, P=2.26 × 10(-19)), and identify three independent signals within the DEFA locus (rs2738058, P=1.15 × 10(-19); rs12716641, P=9.53 × 10(-9); rs9314614, P=4.25 × 10(-9), multivariate association). The risk variants on 3q27.3 and 11p11.2 show strong association with mRNA expression levels in blood cells while allele frequencies of the risk variants within ST6GAL1, ACCS and DEFA correlate with geographical variation in IgAN prevalence. Our findings expand our understanding on IgAN genetic susceptibility and provide novel biological insights into molecular mechanisms underlying IgAN.

1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls

Chapter III

Study Statistics

Key metrics and study information

27993
Total Participants
GWAS
Study Type
Yes
Replicated
6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls
Replication Participants
East Asian
Ancestry
Singapore, China
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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