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GWAS Study

A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.

Fritsche LG, Igl W, Bailey JN et al.

26691988 PubMed ID
GWAS Study Type
36909 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

FL
Fritsche LG
IW
Igl W
BJ
Bailey JN
GF
Grassmann F
SS
Sengupta S
BJ
Bragg-Gresham JL
BK
Burdon KP
HS
Hebbring SJ
WC
Wen C
GM
Gorski M
KI
Kim IK
CD
Cho D
ZD
Zack D
SE
Souied E
SH
Scholl HP
BE
Bala E
LK
Lee KE
HD
Hunter DJ
SR
Sardell RJ
MP
Mitchell P
MJ
Merriam JE
CV
Cipriani V
HJ
Hoffman JD
ST
Schick T
LY
Lechanteur YT
GR
Guymer RH
JM
Johnson MP
JY
Jiang Y
SC
Stanton CM
BG
Buitendijk GH
ZX
Zhan X
KA
Kwong AM
BA
Boleda A
BM
Brooks M
GL
Gieser L
RR
Ratnapriya R
BK
Branham KE
FJ
Foerster JR
HJ
Heckenlively JR
OM
Othman MI
VB
Vote BJ
LH
Liang HH
SE
Souzeau E
MI
McAllister IL
IT
Isaacs T
HJ
Hall J
LS
Lake S
MD
Mackey DA
CI
Constable IJ
CJ
Craig JE
KT
Kitchner TE
YZ
Yang Z
SZ
Su Z
LH
Luo H
CD
Chen D
OH
Ouyang H
FK
Flagg K
LD
Lin D
MG
Mao G
FH
Ferreyra H
SK
Stark K
VS
von Strachwitz CN
WA
Wolf A
BC
Brandl C
RG
Rudolph G
OM
Olden M
MM
Morrison MA
MD
Morgan DJ
SM
Schu M
AJ
Ahn J
SG
Silvestri G
TE
Tsironi EE
PK
Park KH
FL
Farrer LA
OA
Orlin A
BA
Brucker A
LM
Li M
CC
Curcio CA
MS
Mohand-Saïd S
SJ
Sahel JA
AI
Audo I
BM
Benchaboune M
CA
Cree AJ
RC
Rennie CA
GS
Goverdhan SV
GM
Grunin M
HS
Hagbi-Levi S
CP
Campochiaro P
KN
Katsanis N
HF
Holz FG
BF
Blond F
BH
Blanché H
DJ
Deleuze JF
IR
Igo RP
TB
Truitt B
PN
Peachey NS
MS
Meuer SM
MC
Myers CE
ME
Moore EL
KR
Klein R
HM
Hauser MA
PE
Postel EA
CM
Courtenay MD
SS
Schwartz SG
KJ
Kovach JL
SW
Scott WK
LG
Liew G
TA
Tan AG
GB
Gopinath B
MJ
Merriam JC
SR
Smith RT
KJ
Khan JC
SH
Shahid H
MA
Moore AT
MJ
McGrath JA
LR
Laux R
BM
Brantley MA
AA
Agarwal A
EL
Ersoy L
CA
Caramoy A
LT
Langmann T
SN
Saksens NT
DJ
de Jong EK
HC
Hoyng CB
CM
Cain MS
RA
Richardson AJ
MT
Martin TM
BJ
Blangero J
WD
Weeks DE
DB
Dhillon B
VD
van Duijn CM
DK
Doheny KF
RJ
Romm J
KC
Klaver CC
HC
Hayward C
GM
Gorin MB
KM
Klein ML
BP
Baird PN
DH
den Hollander AI
FS
Fauser S
YJ
Yates JR
AR
Allikmets R
WJ
Wang JJ
SD
Schaumberg DA
KB
Klein BE
HS
Hagstrom SA
CI
Chowers I
LA
Lotery AJ
LT
Léveillard T
ZK
Zhang K
BM
Brilliant MH
HA
Hewitt AW
SA
Swaroop A
CE
Chew EY
PM
Pericak-Vance MA
DM
DeAngelis M
SD
Stambolian D
HJ
Haines JL
IS
Iyengar SK
WB
Weber BH
AG
Abecasis GR
HI
Heid IM
Chapter II

Abstract

Summary of the research findings

Advanced age-related macular degeneration (AMD) is the leading cause of blindness in the elderly, with limited therapeutic options. Here we report on a study of >12 million variants, including 163,714 directly genotyped, mostly rare, protein-altering variants. Analyzing 16,144 patients and 17,832 controls, we identify 52 independently associated common and rare variants (P < 5 × 10(-8)) distributed across 34 loci. Although wet and dry AMD subtypes exhibit predominantly shared genetics, we identify the first genetic association signal specific to wet AMD, near MMP9 (difference P value = 4.1 × 10(-10)). Very rare coding variants (frequency <0.1%) in CFH, CFI and TIMP3 suggest causal roles for these genes, as does a splice variant in SLC16A8. Our results support the hypothesis that rare coding variants can pinpoint causal genes within known genetic loci and illustrate that applying the approach systematically to detect new loci requires extremely large sample sizes.

16,144 European ancestry cases, 17,832 European ancestry controls

Chapter III

Study Statistics

Key metrics and study information

36909
Total Participants
GWAS
Study Type
Yes
Replicated
473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls
Replication Participants
European, Asian unspecified, African unspecified
Ancestry
Chapter IV

Analysis

Comprehensive review of health and genetic findings

Important Disclaimer: This review has been performed semi-automatically and is provided for informational purposes only. While we strive for accuracy, this analysis may contain errors, omissions, or misinterpretations of the original research. DNA Genics disclaims all liability for any inaccuracies, errors, or consequences arising from the use of this information. Users should independently verify all information and consult original research publications before making any decisions based on this content. This analysis is not intended as a substitute for professional scientific review or medical advice.

Analysis In Progress

Our analysis of this publication is currently being prepared. Please check back soon for comprehensive insights into the health and genetic findings discussed in this research.