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GWAS Study

Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.

Bailey JN, Loomis SJ, Kang JH et al.

26752265 PubMed ID
GWAS Study Type
49749 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

BJ
Bailey JN
LS
Loomis SJ
KJ
Kang JH
AR
Allingham RR
GP
Gharahkhani P
KC
Khor CC
BK
Burdon KP
AH
Aschard H
CD
Chasman DI
IR
Igo RP
HP
Hysi PG
GC
Glastonbury CA
AA
Ashley-Koch A
BM
Brilliant M
BA
Brown AA
BD
Budenz DL
BA
Buil A
CC
Cheng CY
CH
Choi H
CW
Christen WG
CG
Curhan G
DV
De Vivo I
FJ
Fingert JH
FP
Foster PJ
FC
Fuchs C
GD
Gaasterland D
GT
Gaasterland T
HA
Hewitt AW
HF
Hu F
HD
Hunter DJ
KA
Khawaja AP
LR
Lee RK
LZ
Li Z
LP
Lichter PR
MD
Mackey DA
MP
McGuffin P
MP
Mitchell P
MS
Moroi SE
PS
Perera SA
PK
Pepper KW
QQ
Qi Q
RT
Realini T
RJ
Richards JE
RP
Ridker PM
RE
Rimm E
RR
Ritch R
RM
Ritchie M
SJ
Schuman JS
SW
Scott WK
SK
Singh K
SA
Sit AJ
SY
Song YE
TR
Tamimi RM
TF
Topouzis F
VA
Viswanathan AC
VS
Verma SS
VD
Vollrath D
WJ
Wang JJ
WN
Weisschuh N
WB
Wissinger B
WG
Wollstein G
WT
Wong TY
YB
Yaspan BL
ZD
Zack DJ
ZK
Zhang K
SE
Study EN
WR
Weinreb RN
PM
Pericak-Vance MA
SK
Small K
HC
Hammond CJ
AT
Aung T
LY
Liu Y
VE
Vithana EN
MS
MacGregor S
CJ
Craig JE
KP
Kraft P
HG
Howell G
HM
Hauser MA
PL
Pasquale LR
HJ
Haines JL
WJ
Wiggs JL
Chapter II

Abstract

Summary of the research findings

Primary open-angle glaucoma (POAG) is a leading cause of blindness worldwide. To identify new susceptibility loci, we performed meta-analysis on genome-wide association study (GWAS) results from eight independent studies from the United States (3,853 cases and 33,480 controls) and investigated the most significantly associated SNPs in two Australian studies (1,252 cases and 2,592 controls), three European studies (875 cases and 4,107 controls) and a Singaporean Chinese study (1,037 cases and 2,543 controls). A meta-analysis of the top SNPs identified three new associated loci: rs35934224[T] in TXNRD2 (odds ratio (OR) = 0.78, P = 4.05 × 10(-11)) encoding a mitochondrial protein required for redox homeostasis; rs7137828[T] in ATXN2 (OR = 1.17, P = 8.73 × 10(-10)); and rs2745572[A] upstream of FOXC1 (OR = 1.17, P = 1.76 × 10(-10)). Using RT-PCR and immunohistochemistry, we show TXNRD2 and ATXN2 expression in retinal ganglion cells and the optic nerve head. These results identify new pathways underlying POAG susceptibility and suggest new targets for preventative therapies.

3,853 European ancestry cases, 33,480 European ancestry controls

Chapter III

Study Statistics

Key metrics and study information

49749
Total Participants
GWAS
Study Type
Yes
Replicated
2,137 European ancestry cases, 6,699 European ancestry controls, 1,037 Singaporean Chinese ancestry cases, 2,543 Singaporean Chinese ancestry controls
Replication Participants
European, East Asian
Ancestry
U.S., Australia, Germany, U.K., Singapore
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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