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GWAS Study

An exome array study of the plasma metabolome.

Rhee EP, Yang Q, Yu B et al.

27453504 PubMed ID
GWAS Study Type
3604 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

RE
Rhee EP
YQ
Yang Q
YB
Yu B
LX
Liu X
CS
Cheng S
DA
Deik A
PK
Pierce KA
BK
Bullock K
HJ
Ho JE
LD
Levy D
FJ
Florez JC
KS
Kathiresan S
LM
Larson MG
VR
Vasan RS
CC
Clish CB
WT
Wang TJ
BE
Boerwinkle E
OC
O'Donnell CJ
GR
Gerszten RE
Chapter II

Abstract

Summary of the research findings

The study of rare variants may enhance our understanding of the genetic determinants of the metabolome. Here, we analyze the association between 217 plasma metabolites and exome variants on the Illumina HumanExome Beadchip in 2,076 participants in the Framingham Heart Study, with replication in 1,528 participants of the Atherosclerosis Risk in Communities Study. We identify an association between GMPS and xanthosine using single variant analysis and associations between HAL and histidine, PAH and phenylalanine, and UPB1 and ureidopropionate using gene-based tests (P<5 × 10(-8) in meta-analysis), highlighting novel coding variants that may underlie inborn errors of metabolism. Further, we show how an examination of variants across the spectrum of allele frequency highlights independent association signals at select loci and generates a more integrated view of metabolite heritability. These studies build on prior metabolomics genome wide association studies to provide a more complete picture of the genetic architecture of the plasma metabolome.

2,076 European ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

3604
Total Participants
GWAS
Study Type
Yes
Replicated
1,528 European ancestry individuals
Replication Participants
European
Ancestry
U.S.
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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