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GWAS Study

An Unexpectedly Complex Architecture for Skin Pigmentation in Africans.

Martin AR, Lin M, Granka JM et al.

29195075 PubMed ID
GWAS Study Type
456 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

MA
Martin AR
LM
Lin M
GJ
Granka JM
MJ
Myrick JW
LX
Liu X
SA
Sockell A
AE
Atkinson EG
WC
Werely CJ
MM
Möller M
SM
Sandhu MS
KD
Kingsley DM
HE
Hoal EG
LX
Liu X
DM
Daly MJ
FM
Feldman MW
GC
Gignoux CR
BC
Bustamante CD
HB
Henn BM
Chapter II

Abstract

Summary of the research findings

Approximately 15 genes have been directly associated with skin pigmentation variation in humans, leading to its characterization as a relatively simple trait. However, by assembling a global survey of quantitative skin pigmentation phenotypes, we demonstrate that pigmentation is more complex than previously assumed, with genetic architecture varying by latitude. We investigate polygenicity in the KhoeSan populations indigenous to southern Africa who have considerably lighter skin than equatorial Africans. We demonstrate that skin pigmentation is highly heritable, but known pigmentation loci explain only a small fraction of the variance. Rather, baseline skin pigmentation is a complex, polygenic trait in the KhoeSan. Despite this, we identify canonical and non-canonical skin pigmentation loci, including near SLC24A5, TYRP1, SMARCA2/VLDLR, and SNX13, using a genome-wide association approach complemented by targeted resequencing. By considering diverse, under-studied African populations, we show how the architecture of skin pigmentation can vary across humans subject to different local evolutionary pressures.

216 Sub-Saharan African ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

456
Total Participants
GWAS
Study Type
Yes
Replicated
240 Sub-Saharan African ancestry individuals
Replication Participants
Sub-Saharan African
Ancestry
South Africa
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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