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GWAS Study

Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.

Yao C, Chen G, Song C et al.

30111768 PubMed ID
GWAS Study Type
11159 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

YC
Yao C
CG
Chen G
SC
Song C
KJ
Keefe J
MM
Mendelson M
HT
Huan T
SB
Sun BB
LA
Laser A
MJ
Maranville JC
WH
Wu H
HJ
Ho JE
CP
Courchesne P
LA
Lyass A
LM
Larson MG
GC
Gieger C
GJ
Graumann J
JA
Johnson AD
DJ
Danesh J
RH
Runz H
HS
Hwang SJ
LC
Liu C
BA
Butterworth AS
SK
Suhre K
LD
Levy D
Chapter II

Abstract

Summary of the research findings

Identifying genetic variants associated with circulating protein concentrations (protein quantitative trait loci; pQTLs) and integrating them with variants from genome-wide association studies (GWAS) may illuminate the proteome's causal role in disease and bridge a knowledge gap regarding SNP-disease associations. We provide the results of GWAS of 71 high-value cardiovascular disease proteins in 6861 Framingham Heart Study participants and independent external replication. We report the mapping of over 16,000 pQTL variants and their functional relevance. We provide an integrated plasma protein-QTL database. Thirteen proteins harbor pQTL variants that match coronary disease-risk variants from GWAS or test causal for coronary disease by Mendelian randomization. Eight of these proteins predict new-onset cardiovascular disease events in Framingham participants. We demonstrate that identifying pQTLs, integrating them with GWAS results, employing Mendelian randomization, and prospectively testing protein-trait associations holds potential for elucidating causal genes, proteins, and pathways for cardiovascular disease and may identify targets for its prevention and treatment.

6861 European ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

11159
Total Participants
GWAS
Study Type
Yes
Replicated
4298 European ancestry individuals
Replication Participants
European
Ancestry
Germany, U.K., U.S.
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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Analysis In Progress

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