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GWAS Study

Using Adipose Measures from Health Care Provider-Based Imaging Data for Discovery.

Cha EDK, Veturi Y, Agarwal C et al.

30363675 PubMed ID
GWAS Study Type
2545 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

CE
Cha EDK
VY
Veturi Y
AC
Agarwal C
PA
Patel A
AM
Arbabshirani MR
PS
Pendergrass SA
Chapter II

Abstract

Summary of the research findings

The location and type of adipose tissue is an important factor in metabolic syndrome. A database of picture archiving and communication system (PACS) derived abdominal computerized tomography (CT) images from a large health care provider, Geisinger, was used for large-scale research of the relationship of volume of subcutaneous adipose tissue (SAT) and visceral adipose tissue (VAT) with obesity-related diseases and clinical laboratory measures. Using a "greedy snake" algorithm and 2,545 CT images from the Geisinger PACS, we measured levels of VAT, SAT, total adipose tissue (TAT), and adipose ratio volumes. Sex-combined and sex-stratified association testing was done between adipose measures and 1,233 disease diagnoses and 37 clinical laboratory measures. A genome-wide association study (GWAS) for adipose measures was also performed. SAT was strongly associated with obesity and morbid obesity. VAT levels were strongly associated with type 2 diabetes-related diagnoses (p = 1.5 × 10-58), obstructive sleep apnea (p = 7.7 × 10-37), high-density lipoprotein (HDL) levels (p = 1.42 × 10-36), triglyceride levels (p = 1.44 × 10-43), and white blood cell (WBC) counts (p = 7.37 × 10-9). Sex-stratified tests revealed stronger associations among women, indicating the increased influence of VAT on obesity-related disease outcomes particularly among women. The GWAS identified some suggestive associations. This study supports the utility of pursuing future clinical and genetic discoveries with existing imaging data-derived adipose tissue measures deployed at a larger scale.

2,545 European ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

2545
Total Participants
GWAS
Study Type
No
Replicated
European
Ancestry
U.S.
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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