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GWAS Study

A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.

Adhikari K, Mendoza-Revilla J, Sohail A et al.

30664655 PubMed ID
GWAS Study Type
6236 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

AK
Adhikari K
MJ
Mendoza-Revilla J
SA
Sohail A
FM
Fuentes-Guajardo M
LJ
Lampert J
CJ
Chacón-Duque JC
HM
Hurtado M
VV
Villegas V
GV
Granja V
AV
Acuña-Alonzo V
JC
Jaramillo C
AW
Arias W
LR
Lozano RB
EP
Everardo P
GJ
Gómez-Valdés J
VH
Villamil-Ramírez H
SD
Silva de Cerqueira CC
HT
Hunemeier T
RV
Ramallo V
SL
Schuler-Faccini L
SF
Salzano FM
GR
Gonzalez-José R
BM
Bortolini MC
CS
Canizales-Quinteros S
GC
Gallo C
PG
Poletti G
BG
Bedoya G
RF
Rothhammer F
TD
Tobin DJ
FM
Fumagalli M
BD
Balding D
RA
Ruiz-Linares A
Chapter II

Abstract

Summary of the research findings

We report a genome-wide association scan in >6,000 Latin Americans for pigmentation of skin and eyes. We found eighteen signals of association at twelve genomic regions. These include one novel locus for skin pigmentation (in 10q26) and three novel loci for eye pigmentation (in 1q32, 20q13 and 22q12). We demonstrate the presence of multiple independent signals of association in the 11q14 and 15q13 regions (comprising the GRM5/TYR and HERC2/OCA2 genes, respectively) and several epistatic interactions among independently associated alleles. Strongest association with skin pigmentation at 19p13 was observed for an Y182H missense variant (common only in East Asians and Native Americans) in MFSD12, a gene recently associated with skin pigmentation in Africans. We show that the frequency of the derived allele at Y182H is significantly correlated with lower solar radiation intensity in East Asia and infer that MFSD12 was under selection in East Asians, probably after their split from Europeans.

6,236 Latin American individuals

Chapter III

Study Statistics

Key metrics and study information

6236
Total Participants
GWAS
Study Type
No
Replicated
Hispanic or Latin American
Ancestry
Mexico, Brazil, Chile, Colombia, Peru
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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