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GWAS Study

AATF and SMARCA2 are associated with thyroid volume in Hashimoto's thyroiditis patients.

Brčić L, Barić A, Benzon B et al.

32019955 PubMed ID
GWAS Study Type
345 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

BL
Brčić L
BA
Barić A
BB
Benzon B
BM
Brekalo M
GS
Gračan S
KD
Kaličanin D
ŠV
Škrabić V
ZT
Zemunik T
BM
Barbalić M
NI
Novak I
PP
Pešutić Pisac V
PA
Punda A
BP
Boraska Perica V
Chapter II

Abstract

Summary of the research findings

Thyroid volume of Hashimoto's thyroiditis (HT) patients varies in size over the course of disease and it may reflect changes in biological function of thyroid gland. Patients with subclinical hypothyroidism predominantly have increased thyroid volume whereas patients with more pronounced hypothyroidism have smaller thyroid volumes. Suggested mechanism for thyroid atrophy is thyrocyte death due to apoptosis. We performed the first genome-wide association study (GWAS) of thyroid volume in two groups of HT patients, depending on levothyroxine (LT4) therapy, and then meta-analysed across. Study included 345 HT patients in total and 6 007 322 common autosomal genetic variants. Underlying hypothesis was that genetic components that are involved in regulation of thyroid volume display their effect in specific pathophysiologic conditions of thyroid gland of HT patients. We additionally performed immunohistochemical analysis using thyroid tissues and analysed differences in expression levels of identified proteins and apoptotic marker between HT patients and controls. We found genome-wide significant association of two loci, both involved in apoptosis, with thyroid volume of HT patients: rs7212416 inside apoptosis-antagonizing transcription factor AATF (P = 8.95 × 10-9) and rs10738556 near chromatin-remodeling SMARCA2 (P = 2.83 × 10-8). In immunohistochemical analysis we observed that HT patients with homozygous AATF risk genotypes have decreased AATF expression (0.46-fold, P < 0.0001) and increased apoptosis (3.99-fold, P = 0.0001) in comparison to controls. HT patients with heterozygous SMARCA2 genotypes have decreased SMARCA2 expression, albeit without reaching statistical significance (1.07-fold, P = 0.5876), and significantly increased apoptosis (4.11-fold, P < 0.0001). By two lines of evidence we show that two highly plausible genetic loci, AATF and SMARCA2, may be involved in determining the thyroid volume of HT patients. The results of our study significantly add to the current knowledge of disturbed biological mechanisms in thyroid gland of HT patients.

345 European ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

345
Total Participants
GWAS
Study Type
No
Replicated
European
Ancestry
Croatia
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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