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GWAS Study

Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.

Sun Q, Graff M, Rowland B et al.

34376796 PubMed ID
GWAS Study Type
2559 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

SQ
Sun Q
GM
Graff M
RB
Rowland B
WJ
Wen J
HL
Huang L
MT
Miller-Fleming TW
HJ
Haessler J
PM
Preuss MH
CJ
Chai JF
LM
Lee MP
AC
Avery CL
CC
Cheng CY
FN
Franceschini N
SX
Sim X
CN
Cox NJ
KC
Kooperberg C
NK
North KE
LY
Li Y
RL
Raffield LM
Chapter II

Abstract

Summary of the research findings

Despite the dramatic underrepresentation of non-European populations in human genetics studies, researchers continue to exclude participants of non-European ancestry, as well as variants rare in European populations, even when these data are available. This practice perpetuates existing research disparities and can lead to important and large effect size associations being missed. Here, we conducted genome-wide association studies (GWAS) of 31 serum and urine biomarker quantitative traits in African (n = 9354), East Asian (n = 2559), and South Asian (n = 9823) ancestry UK Biobank (UKBB) participants. We adjusted for all known GWAS catalog variants for each trait, as well as novel signals identified in a recent European ancestry-focused analysis of UKBB participants. We identify 7 novel signals in African ancestry and 2 novel signals in South Asian ancestry participants (p < 1.61E-10). Many of these signals are highly plausible, including a cis pQTL for the gene encoding gamma-glutamyl transferase and PIEZO1 and G6PD variants with impacts on HbA1c through likely erythrocytic mechanisms. This work illustrates the importance of using the genetic data we already have in diverse populations, with novel discoveries possible in even modest sample sizes.

2,559 East Asian ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

2559
Total Participants
GWAS
Study Type
Yes
Replicated
186 African American or Afro-Caribbean individuals
Replication Participants
East Asian, South Asian, African unspecified, African American or Afro-Caribbean
Ancestry
U.K., U.S.
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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Analysis In Progress

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