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GWAS Study

Multi-ancestry genome-wide association analyses identify novel genetic mechanisms in rheumatoid arthritis.

Ishigaki K, Sakaue S, Terao C et al.

36333501 PubMed ID
GWAS Study Type
276020 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

IK
Ishigaki K
SS
Sakaue S
TC
Terao C
LY
Luo Y
SK
Sonehara K
YK
Yamaguchi K
AT
Amariuta T
TC
Too CL
LV
Laufer VA
SI
Scott IC
VS
Viatte S
TM
Takahashi M
OK
Ohmura K
MA
Murasawa A
HM
Hashimoto M
IH
Ito H
HM
Hammoudeh M
ES
Emadi SA
MB
Masri BK
HH
Halabi H
BH
Badsha H
UI
Uthman IW
WX
Wu X
LL
Lin L
LT
Li T
PD
Plant D
BA
Barton A
OG
Orozco G
VS
Verstappen SMM
BJ
Bowes J
MA
MacGregor AJ
HS
Honda S
KM
Koido M
TK
Tomizuka K
KY
Kamatani Y
TH
Tanaka H
TE
Tanaka E
SA
Suzuki A
MY
Maeda Y
YK
Yamamoto K
MS
Miyawaki S
XG
Xie G
ZJ
Zhang J
AC
Amos CI
KE
Keystone E
WG
Wolbink G
VD
van der Horst-Bruinsma I
CJ
Cui J
LK
Liao KP
CR
Carroll RJ
LH
Lee HS
BS
Bang SY
SK
Siminovitch KA
DV
de Vries N
AL
Alfredsson L
RS
Rantapää-Dahlqvist S
KE
Karlson EW
BS
Bae SC
KR
Kimberly RP
EJ
Edberg JC
MX
Mariette X
HT
Huizinga T
DP
Dieudé P
SM
Schneider M
KM
Kerick M
DJ
Denny JC
MK
Matsuda K
MK
Matsuo K
MT
Mimori T
MF
Matsuda F
FK
Fujio K
TY
Tanaka Y
KA
Kumanogoh A
TM
Traylor M
LC
Lewis CM
ES
Eyre S
XH
Xu H
SR
Saxena R
AT
Arayssi T
KY
Kochi Y
IK
Ikari K
HM
Harigai M
GP
Gregersen PK
YK
Yamamoto K
LB
Louis Bridges S
PL
Padyukov L
MJ
Martin J
KL
Klareskog L
OY
Okada Y
RS
Raychaudhuri S
Chapter II

Abstract

Summary of the research findings

Rheumatoid arthritis (RA) is a highly heritable complex disease with unknown etiology. Multi-ancestry genetic research of RA promises to improve power to detect genetic signals, fine-mapping resolution and performances of polygenic risk scores (PRS). Here, we present a large-scale genome-wide association study (GWAS) of RA, which includes 276,020 samples from five ancestral groups. We conducted a multi-ancestry meta-analysis and identified 124 loci (P < 5 × 10-8), of which 34 are novel. Candidate genes at the novel loci suggest essential roles of the immune system (for example, TNIP2 and TNFRSF11A) and joint tissues (for example, WISP1) in RA etiology. Multi-ancestry fine-mapping identified putatively causal variants with biological insights (for example, LEF1). Moreover, PRS based on multi-ancestry GWAS outperformed PRS based on single-ancestry GWAS and had comparable performance between populations of European and East Asian ancestries. Our study provides several insights into the etiology of RA and improves the genetic predictability of RA.

22,350 European ancestry cases, 74,823 European ancestry controls, 11,025 East Asian ancestry cases, 162,608 East Asian ancestry controls, 999 African ancestry cases, 1,108 African ancestry controls, 986 South Asian ancestry cases, 1,258 South Asian ancestry controls, 511 Arab ancestry cases, 352 Arab ancestry controls

Chapter III

Study Statistics

Key metrics and study information

276020
Total Participants
GWAS
Study Type
No
Replicated
European, East Asian, African American or Afro-Caribbean, South Asian, Greater Middle Eastern (Middle Eastern, North African or Persian)
Ancestry
Canada, Netherlands, Sweden, U.S., U.K., France, Germany, Spain, Japan, China, Republic of Korea, Malaysia, Jordan, Lebanon, Qatar, Saudi Arabia, United Arab Emirates
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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Analysis In Progress

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