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GWAS Study

Genome-Wide Association Study and Transcriptome of Japanese Patients with Developmental Dysplasia of the Hip Demonstrates an Association with the Ferroptosis Signaling Pathway.

Mori Y, Ueno K, Chiba D et al.

36902448 PubMed ID
GWAS Study Type
79935 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

MY
Mori Y
UK
Ueno K
CD
Chiba D
HK
Hashimoto K
KY
Kawai Y
BK
Baba K
TH
Tanaka H
AT
Aki T
OM
Ogasawara M
SN
Shibasaki N
TK
Tokunaga K
AT
Aizawa T
NM
Nagasaki M
Chapter II

Abstract

Summary of the research findings

This study examined the association between developmental dysplasia of the hip (DDH) and disease-associated loci in a Japanese cohort. A genome-wide association study (GWAS) of 238 Japanese patients with DDH and 2044 healthy individuals was performed. As a replicate, GWAS was also conducted on the UK Biobank data with 3315 cases and matched 74,038 controls. Gene set enrichment analyses (GSEAs) of both the genetics and transcriptome of DDH were performed. Transcriptome analysis of cartilage specimens from DDH-associated osteoarthritis and femoral neck fractures was performed as a control. Most of the lead variants were very low-frequency ones in the UK, and variants in the Japanese GWAS could not be replicated with the UK GWAS. We assigned DDH-related candidate variants to 42 and 81 genes from the Japanese and UK GWASs, respectively, using functional mapping and annotation. GSEA of gene ontology, disease ontology, and canonical pathways identified the most enriched pathway to be the ferroptosis signaling pathway, both in the Japanese gene set as well as the Japanese and UK merged set. Transcriptome GSEA also identified significant downregulation of genes in the ferroptosis signaling pathway. Thus, the ferroptosis signaling pathway may be associated with the pathogenic mechanism of DDH.

238 Japanese ancestry cases, 2,044 Japanese ancestry controls

Chapter III

Study Statistics

Key metrics and study information

79935
Total Participants
GWAS
Study Type
Yes
Replicated
3,315 European ancestry cases, 74,038 European ancestry controls
Replication Participants
East Asian, European
Ancestry
Japan, U.K.
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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Analysis In Progress

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