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GWAS Study

Predicting Hearing Loss in Testicular Cancer Patients after Cisplatin-Based Chemotherapy.

Garcia SL, Lauritsen J, Christiansen BK et al.

37568739 PubMed ID
GWAS Study Type
424 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

GS
Garcia SL
LJ
Lauritsen J
CB
Christiansen BK
HI
Hansen IF
BM
Bandak M
DM
Dalgaard MD
DG
Daugaard G
GR
Gupta R
Chapter II

Abstract

Summary of the research findings

Testicular cancer is predominantly curable, but the long-term side effects of chemotherapy have a severe impact on life quality. In this research study, we focus on hearing loss as a part of overall chemotherapy-induced ototoxicity. This is a unique approach where we combine clinical data from the acclaimed nationwide Danish Testicular Cancer (DaTeCa)-Late database. Clinical and genetic data on 433 patients were collected from hospital files in October 2014. Hearing loss was classified according to the FACT/GOG-Ntx-11 version 4 self-reported Ntx6. Machine learning models combining a genome-wide association study within a nested cross-validated logistic regression were applied to identify patients at high risk of hearing loss. The model comprising clinical and genetic data identified 67% of the patients with hearing loss; however, this was with a false discovery rate of 49%. For the non-affected patients, the model identified 66% of the patients with a false omission rate of 19%. An area under the receiver operating characteristic (ROC-AUC) curve of 0.73 (95% CI, 0.71-0.74) was obtained, and the model suggests genes SOD2 and MGST3 as important in improving prediction over the clinical-only model with a ROC-AUC of 0.66 (95% CI, 0.65-0.66). Such prediction models may be used to allow earlier detection and prevention of hearing loss. We suggest a possible biological mechanism for cisplatin-induced hearing loss development. On confirmation in larger studies, such models can help balance treatment in clinical practice.

146 European ancestry cases, 278 European ancestry controls

Chapter III

Study Statistics

Key metrics and study information

424
Total Participants
GWAS
Study Type
No
Replicated
European
Ancestry
Denmark
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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