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GWAS Study

Association of Genetic Markers with the Risk of Early-Onset Breast Cancer in Kazakh Women.

Skvortsova L, Abdikerim S, Yergali K et al.

38254997 PubMed ID
GWAS Study Type
307 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

SL
Skvortsova L
AS
Abdikerim S
YK
Yergali K
MN
Mit N
PA
Perfilyeva A
ON
Omarbayeva N
ZA
Zhunussova A
KZ
Kachiyeva Z
ST
Sadykova T
BB
Bekmanov B
KD
Kaidarova D
DL
Djansugurova L
ZG
Zhunussova G
Chapter II

Abstract

Summary of the research findings

Breast cancer is a global health problem. It is an age-dependent disease, but cases of early-onset breast cancer (eBC) are gradually increasing. There are many unresolved questions regarding eBC risk factors, mechanisms of development and screening. Only 10% of eBC cases are due to mutations in the BRCA1/BRCA2 genes, and 90% have a more complex genetic background. This poses a significant challenge to timely cancer detection in young women and highlights the need for research and awareness. Therefore, identifying genetic risk factors for eBC is essential to solving these problems. This study represents an association analysis of 144 eBC cases and 163 control participants to identify genetic markers associated with eBC risks in Kazakh women. We performed a two-stage approach in association analysis to assess genetic predisposition to eBC. First-stage genome-wide association analysis revealed two risk intronic loci in the CHI3L2 gene (p = 5.2 × 10-6) and MGAT5 gene (p = 8.4 × 10-6). Second-stage exonic polymorphisms haplotype analysis showed significant risks for seven haplotypes (p < 9.4 × 10-4). These results point to the importance of studying medium- and low-penetrant genetic markers in their haplotype combinations for a detailed understanding of the role of detected genetic markers in eBC development and prediction.

144 Kazakh ancestry cases, 163 Kazakh ancestry controls

Chapter III

Study Statistics

Key metrics and study information

307
Total Participants
GWAS
Study Type
No
Replicated
Other
Ancestry
Kazakhstan
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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