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mtDNA Haplogroup • Maternal Lineage

L2A1A3C

mtDNA Haplogroup L2A1A3C

~2,000 years ago
West/Central Africa
0 subclades
1 ancient samples
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Chapter I

The Story

The journey of mtDNA haplogroup L2A1A3C

Origins and Evolution

L2A1A3C is a terminal subclade within the broader L2A1A3 lineage and descends from the well-established West/Central African maternal radiation of haplogroup L2a. Based on its position in the phylogeny and the estimated age of its parent clade (L2A1A3 ~3.5 kya), L2A1A3C most likely arose in the late Holocene (on the order of ~2 kya). The lineage is defined by private or derived mutations within the L2A1A3 framework and its emergence fits the timeframe of demographic expansions and increased regional connectivity in West/Central Africa during the mid-to-late Holocene.

Subclades (if applicable)

As a downstream branch of L2A1A3, L2A1A3C appears to be a relatively specific terminal or near-terminal clade in current datasets. Published and public mtDNA trees show a small number of private variants characterizing L2A1A3C; however, additional high-resolution sequencing across diverse African populations may reveal further internal structure. At present, there are few well-documented downstream subclades reported in the literature, indicating either recent origin, limited sampling, or both.

Geographical Distribution

The geographic pattern of L2A1A3C mirrors the distribution of many L2a-derived lineages: highest frequencies in West and Central Africa, moderate presence through regions impacted by Bantu-speaking expansions (Central, Eastern and Southern Africa), and detectable presence in African-descended populations in the Americas because of the trans-Atlantic slave trade. Low-frequency appearances are also observed in the Horn of Africa and in North Africa and parts of the Middle East consistent with historical gene flow and trade-mediated contacts. One ancient DNA specimen matching this subclade has been reported in reference databases, which supports its presence in archaeological contexts though the aDNA sample count remains small.

Historical and Cultural Significance

L2A1A3C should be considered in the context of Holocene demographic shifts across sub-Saharan Africa. Its timing and distribution are consistent with involvement in the expansions of Bantu-speaking agriculturalists and associated Iron Age cultural changes that redistributed maternal lineages across large parts of Africa. In later history, individuals carrying L2A1A3C were carried to the Americas and the Caribbean through the trans-Atlantic slave trade, making the haplogroup part of the maternal legacy in African-descended populations outside Africa.

Conclusion

L2A1A3C represents a geographically focused, late-Holocene maternal lineage rooted in West/Central Africa. It is informative for studies of regional demographic processes such as Bantu-era expansions and historic diaspora movements, but its relatively recent origin and limited sampling mean that continued mitogenome sequencing in diverse African and African-descended populations is needed to clarify its full internal structure and historical dynamics.

Key Points

  • Origins and Evolution
  • Subclades (if applicable)
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 L2A1A3C Current ~2,000 years ago 🏛️ Roman Period 2,000 years 0 7 1
2 L2A1A3 ~4,000 years ago 🔶 Bronze Age 3,500 years 1 7 0
3 L2A1A ~8,000 years ago 🌾 Neolithic 8,000 years 3 88 4
4 L2A1 ~25,000 years ago 🦴 Paleolithic 25,000 years 8 435 0
5 L2A ~50,000 years ago 🦴 Paleolithic 50,000 years 3 466 12
6 L2 ~70,000 years ago 🦴 Paleolithic 70,000 years 3 535 7
7 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5

Subclades (0)

Terminal branch - no known subclades

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

West/Central Africa

Modern Distribution

The populations where mtDNA haplogroup L2A1A3C is found include:

  1. Yoruba and other West African groups
  2. Bantu-speaking groups across Central, Eastern and Southern Africa
  3. Central African rainforest groups (including some Pygmy populations)
  4. Horn of Africa populations (e.g., Oromo, Amhara) at lower frequencies
  5. Khoe-San and southern African groups (low to moderate frequency due to gene flow)
  6. African-descended populations in the Americas (African American, Afro-Caribbean, Afro-Latin)
  7. North African and Middle Eastern populations (low frequencies from historical admixture)
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

~2k years ago

Haplogroup L2A1A3C

Your mtDNA haplogroup emerged in West/Central Africa

West/Central Africa
Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup L2A1A3C

Cultural Heritage

These ancient cultures have been linked to haplogroup L2A1A3C based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

El Argar Luxmanda Culture Makwasinyi Modern Period Mtwapa Pemba Phase II St. Helena Colonial
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

Top 1 ancient DNA samples directly related to haplogroup L2A1A3C or parent clades

1 / 1 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual STH_524 from St. Helena, dated 1840 CE - 1940 CE
STH_524
St. Helena St. Helena 1840 CE - 1940 CE St. Helena Colonial L2a1a3c Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 1 ancient DNA samples carrying haplogroup L2A1A3C

Time Period Filter
All Time Periods
Showing all samples
Each marker represents an ancient individual
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution of carriers by country of origin

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-16
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.