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mtDNA Haplogroup • Maternal Lineage

L3E3B1

mtDNA Haplogroup L3E3B1

~4,000 years ago
West/Central Africa (Sub-Saharan Africa)
0 subclades
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Chapter I

The Story

The journey of mtDNA haplogroup L3E3B1

Origins and Evolution

mtDNA haplogroup L3E3B is a downstream subclade of L3e3 that appears to have arisen during the Late Holocene in West/Central Africa. As a branch of the broader L3e radiation, L3E3B represents a relatively recent maternal lineage in African mitochondrial phylogeny. The time depth for this clade is shallow compared with basal African macro-haplogroups (e.g., L0, L1), consistent with coalescence within the last several thousand years and with population expansions and regional gene flow events that characterize the Holocene in sub-Saharan Africa.

Subclades (if applicable)

L3E3B is itself a subclade of L3e3; further internal structure (for example named sub-branches such as L3E3B1) is expected but often sparsely sampled in published datasets. Where present, downstream subclades typically show restricted geographic distributions reflecting recent local expansions, founder effects, or drift. Because L3E3B and its sublineages are relatively young and relatively rare in global datasets, their internal topology is incompletely resolved and will benefit from denser whole-mitogenome sequencing across West, Central and Southern African populations.

Geographical Distribution

L3E3B is concentrated in West and Central Africa with detectable presence across a broad swath of sub-Saharan Africa. High frequencies are reported in some West African groups (e.g., Yoruba, Akan) and it is found among Central African rainforest populations including some Pygmy groups, consistent with deep regional maternal continuity and gene flow. The haplogroup is also present among many Bantu-speaking populations in Central, Southern and parts of Eastern Africa, reflecting the demographic impact of Bantu-associated expansions during the Late Holocene. Low to moderate frequencies appear in coastal East African groups (likely through trade and coastal admixture) and trace occurrences are recorded in Southern African populations that experienced admixture with incoming Bantu groups. Due to the transatlantic slave trade and more recent historical migrations, L3E3B is detected at low frequencies in African-descended populations in the Americas and the Caribbean, and occasionally at very low levels in North African and Near Eastern datasets because of historical gene flow.

Historical and Cultural Significance

The distribution of L3E3B aligns with major post-Neolithic demographic processes in Africa rather than with Paleolithic expansions. Its presence in Bantu-speaking populations and in Central/Western hunter-gatherer groups suggests a history of interaction, assimilation, and maternal-line transmission across ethnolinguistic boundaries. L3E3B therefore serves as a useful marker for studying regional Holocene population movements within sub-Saharan Africa and for tracing maternal ancestry in African-descended populations outside Africa, particularly in the Americas where lineages carried by enslaved people persist in modern mitochondrial pools.

The identification of L3E3B in at least one ancient DNA sample (as noted in modern databases) provides direct archaeological corroboration that this lineage was present in past populations and that its modern distribution is not purely a consequence of very recent migrations. However, the sampling of ancient African mitochondrial genomes remains limited compared with some other regions, so archaeological visibility of this clade is currently sparse.

Conclusion

L3E3B is a Holocene West/Central African maternal lineage derived from L3e3 that reflects relatively recent regional demography, including Bantu-associated spread and later historical dispersals. It is most informative for studies focused on sub-Saharan maternal population structure, local founder events, and the maternal component of the African diaspora. Ongoing mitogenome sequencing and targeted sampling in undersampled regions (especially Central and Southern Africa) will refine the phylogeny, geographic resolution, and timing of L3E3B's diversification.

Key Points

  • Origins and Evolution
  • Subclades (if applicable)
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 L3E3B1 Current ~4,000 years ago 🔶 Bronze Age 3,500 years 0 6 0
2 L3E3B ~4,000 years ago 🔶 Bronze Age 3,500 years 2 85 2
3 L3E3 ~6,000 years ago 🪨 Chalcolithic 6,000 years 2 89 0
4 L3e ~30,000 years ago 🦴 Paleolithic 30,000 years 3 565 5
5 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 11 17,621 6
6 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5

Subclades (0)

Terminal branch - no known subclades

Siblings (1)

Other branches from the same parent haplogroup

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

West/Central Africa (Sub-Saharan Africa)

Modern Distribution

The populations where mtDNA haplogroup L3E3B is found include:

  1. Yoruba and other West African groups (Nigeria, Ghana)
  2. Central African rainforest groups including Mbuti and other Pygmy populations
  3. Bantu-speaking populations across Central, Southern and parts of East Africa
  4. Akan, Igbo and other West African ethnic groups
  5. Coastal East African groups (e.g., Swahili-adjacent populations)
  6. Khoe-San–adjacent and some Southern African Bantu groups (lower to moderate frequencies)
  7. African-descended populations in the Americas and the Caribbean (due to transatlantic slave trade)
  8. North African and Near Eastern populations (low frequencies from historical admixture)
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Haplogroup L3E3B1

Your mtDNA haplogroup emerged in West/Central Africa (Sub-Saharan Africa)

West/Central Africa (Sub-Saharan Africa)
~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup L3E3B1

Cultural Heritage

These ancient cultures have been linked to haplogroup L3E3B1 based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Corded Ware Faza Jordanow-Michelsberg Culture Makwasinyi Manda Modern Period Mtwapa St. Helena Colonial Terminal Stone Age
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

Top 50 ancient DNA samples directly related to haplogroup L3E3B1 or parent clades

50 / 50 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual KHO007 from Mongolia, dated 26 CE - 125 CE
KHO007
Mongolia Middle to Late Bronze Age to Xiongnu to Late Medieval Khovd, Mongolia 26 CE - 125 CE Khovd Long-Term L3 Direct
Portrait of ancient individual baa001 from South Africa, dated 38 BCE - 120 BCE
baa001
South Africa South Africa 1900 Years Before Present 38 BCE - 120 BCE Middle Iron Age L0d2c1 Direct
Portrait of ancient individual I13977 from Tanzania, dated 47 BCE - 113 BCE
I13977
Tanzania Prehistoric in Tanzania 47 BCE - 113 BCE Tanzanian Prehistoric L0f2a1 Direct
Portrait of ancient individual I13970 from Tanzania, dated 50 BCE - 60 BCE
I13970
Tanzania Prehistoric in Tanzania 50 BCE - 60 BCE Tanzanian Prehistoric L3h1a2a1 Direct
Portrait of ancient individual I15499 from Serbia, dated 80 CE - 215 CE
I15499
Serbia Roman Serbia 80 CE - 215 CE Roman Provincial L2a1j Direct
Portrait of ancient individual NEV020 from Turkey, dated 80 CE - 227 CE
NEV020
Turkey Nevalı Çori Roman Period 80 CE - 227 CE Nevalı Çori Culture L2a1+143+@16309 Direct
Portrait of ancient individual I8808 from Kenya, dated 84 BCE - 211 BCE
I8808
Kenya Late Stone Age in Kenya 84 BCE - 211 BCE LSA Kenya L4b2a2c Direct
Portrait of ancient individual UCT386 from South Africa, dated 88 BCE - 202 BCE
UCT386
South Africa South Africa 1900 Years Before Present 88 BCE - 202 BCE Middle Iron Age L0d1b2b1b Direct
Portrait of ancient individual UCT386 from South Africa, dated 88 BCE - 202 BCE
UCT386
South Africa Ancient South Africa 88 BCE - 202 BCE L0d1b2b1b Direct
Portrait of ancient individual I10719 from Kenya, dated 91 BCE - 24 BCE
I10719
Kenya Pastoral Neolithic Elmenteitan in Kenya 91 BCE - 24 BCE Elmenteitan Culture L3h1a2a1 Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 100 ancient DNA samples carrying haplogroup L3E3B1

Time Period Filter
All Time Periods
Showing all samples
Each marker represents an ancient individual
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution of carriers by country of origin

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-16
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.