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GWAS Study

Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.

Fan Q, Zhou X, Khor CC et al.

22144915 PubMed ID
GWAS Study Type
8513 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

FQ
Fan Q
ZX
Zhou X
KC
Khor CC
CC
Cheng CY
GL
Goh LK
SX
Sim X
TW
Tay WT
LY
Li YJ
OR
Ong RT
SC
Suo C
CB
Cornes B
IM
Ikram MK
CK
Chia KS
SM
Seielstad M
LJ
Liu J
VE
Vithana E
YT
Young TL
TE
Tai ES
WT
Wong TY
AT
Aung T
TY
Teo YY
SS
Saw SM
Chapter II

Abstract

Summary of the research findings

Corneal astigmatism refers to refractive abnormalities and irregularities in the curvature of the cornea, and this interferes with light being accurately focused at a single point in the eye. This ametropic condition is highly prevalent, influences visual acuity, and is a highly heritable trait. There is currently a paucity of research in the genetic etiology of corneal astigmatism. Here we report the results from five genome-wide association studies of corneal astigmatism across three Asian populations, with an initial discovery set of 4,254 Chinese and Malay individuals consisting of 2,249 cases and 2,005 controls. Replication was obtained from three surveys comprising of 2,139 Indians, an additional 929 Chinese children, and an independent 397 Chinese family trios. Variants in PDGFRA on chromosome 4q12 (lead SNP: rs7677751, allelic odds ratio = 1.26 (95% CI: 1.16-1.36), P(meta) = 7.87×10(-9)) were identified to be significantly associated with corneal astigmatism, exhibiting consistent effect sizes across all five cohorts. This highlights the potential role of variants in PDGFRA in the genetic etiology of corneal astigmatism across diverse Asian populations.

1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malay ancestry cases, 1,220 Malay ancestry controls

Chapter III

Study Statistics

Key metrics and study information

8513
Total Participants
GWAS
Study Type
Yes
Replicated
825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry child cases, 169 Chinese ancestry child controls, 397 Chinese ancestry trios
Replication Participants
South East Asian, South Asian, East Asian
Ancestry
Singapore
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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