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GWAS Study

Genome-wide association meta-analysis identifies new endometriosis risk loci.

Nyholt DR, Low SK, Anderson CA et al.

23104006 PubMed ID
GWAS Study Type
19058 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

ND
Nyholt DR
LS
Low SK
AC
Anderson CA
PJ
Painter JN
US
Uno S
MA
Morris AP
MS
MacGregor S
GS
Gordon SD
HA
Henders AK
MN
Martin NG
AJ
Attia J
HE
Holliday EG
MM
McEvoy M
SR
Scott RJ
KS
Kennedy SH
TS
Treloar SA
MS
Missmer SA
AS
Adachi S
TK
Tanaka K
NY
Nakamura Y
ZK
Zondervan KT
ZH
Zembutsu H
MG
Montgomery GW
Chapter II

Abstract

Summary of the research findings

We conducted a genome-wide association meta-analysis of 4,604 endometriosis cases and 9,393 controls of Japanese and European ancestry. We show that rs12700667 on chromosome 7p15.2, previously found to associate with disease in Europeans, replicates in Japanese (P = 3.6 × 10(-3)), and we confirm association of rs7521902 at 1p36.12 near WNT4. In addition, we establish an association of rs13394619 in GREB1 at 2p25.1 with endometriosis and identify a newly associated locus at 12q22 near VEZT (rs10859871). Excluding cases of European ancestry of minimal or unknown severity, we identified additional previously unknown loci at 2p14 (rs4141819), 6p22.3 (rs7739264) and 9p21.3 (rs1537377). All seven SNP effects were replicated in an independent cohort and associated at P <5 × 10(-8) in a combined analysis. Finally, we found a significant overlap in polygenic risk for endometriosis between the genome-wide association cohorts of European and Japanese descent (P = 8.8 × 10(-11)), indicating that many weakly associated SNPs represent true endometriosis risk loci and that risk prediction and future targeted disease therapy may be transferred across these populations.

3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls

Chapter III

Study Statistics

Key metrics and study information

19058
Total Participants
GWAS
Study Type
Yes
Replicated
1,044 Japanese ancestry, 4,017 Japanese ancestry controls
Replication Participants
East Asian, European
Ancestry
Japan, Australia, U.K.
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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Analysis In Progress

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