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GWAS Study

Genome-wide association study of population-standardised cognitive performance phenotypes in a rural South African community.

Soo CC, Brandenburg JT, Nebel A et al.

36973338 PubMed ID
GWAS Study Type
1887 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

SC
Soo CC
BJ
Brandenburg JT
NA
Nebel A
TS
Tollman S
BL
Berkman L
RM
Ramsay M
CA
Choudhury A
Chapter II

Abstract

Summary of the research findings

Cognitive function is an indicator for global physical and mental health, and cognitive impairment has been associated with poorer life outcomes and earlier mortality. A standard cognition test, adapted to a rural-dwelling African community, and the Oxford Cognition Screen-Plus were used to capture cognitive performance as five continuous traits (total cognition score, verbal episodic memory, executive function, language, and visuospatial ability) for 2,246 adults in this population of South Africans. A novel common variant, rs73485231, reached genome-wide significance for association with episodic memory using data for ~14 million markers imputed from the H3Africa genotyping array data. Window-based replication of previously implicated variants and regions of interest support the discovery of African-specific associated variants despite the small population size and low allele frequency. This African genome-wide association study identifies suggestive associations with general cognition and domain-specific cognitive pathways and lays the groundwork for further genomic studies on cognition in Africa.

1,887 Sub-Saharan African ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

1887
Total Participants
GWAS
Study Type
No
Replicated
Sub-Saharan African
Ancestry
South Africa
Recruitment Country
Chapter IV

Analysis

Comprehensive review of health and genetic findings

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