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mtDNA Haplogroup • Maternal Lineage

F1B1A1A1

mtDNA Haplogroup F1B1A1A1

~4,000 years ago
East to Southeast Asia
0 subclades
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Chapter I

The Story

The journey of mtDNA haplogroup F1B1A1A1

Origins and Evolution

mtDNA haplogroup F1B1A1A1 is a terminal branch derived from F1B1A1A, itself a descendant of the broader F1B lineage. Based on the phylogenetic position within F1 and the time depth estimated for its parent clade, F1B1A1A1 most likely formed in the late Holocene (~3.5 kya) in coastal East to Southeast Asia. Its emergence fits a pattern of relatively recent maternal diversification tied to increasing coastal settlement, maritime technology, and demographic movements of the last few thousand years.

Genetically, F1 lineages are characteristic of East and Southeast Asian maternal pools; the F1B subbranches show finer-scale structure consistent with localized expansions and island dispersals. F1B1A1A1 represents a shallow, regionally informative lineage useful for tracing late-Holocene coastal and Austronesian-period gene flow.

Subclades

As a named terminal subclade, F1B1A1A1 is a downstream branch with limited internal diversity documented in the literature and modern population surveys; it may contain further micro-subclades detectable only with high-resolution complete-mtDNA sequencing. Its parent, F1B1A1A, gives the broader regional context: diversification likely occurred along maritime corridors linking southern China, Taiwan, the Philippines, and eastern Indonesian islands during or prior to Austronesian expansion phases.

Geographical Distribution

The haplogroup shows a coastal and island-biased distribution. Modern population surveys and targeted sampling report F1B1A1A1 primarily among:

  • coastal East Chinese populations including Han groups
  • insular East Asia (Japan, Ryukyu/Okinawa)
  • Koreans at low frequency
  • mainland Southeast Asian groups (Vietnam, Thailand, Laos)
  • Austronesian-speaking populations in Island Southeast Asia (Philippines, eastern Indonesia, Malaysia)
  • pockets in Near Oceania (Austronesian-derived Melanesian and Micronesian communities)

Sparse occurrences are reported in Tibeto-Burman and Himalayan-fringe groups, rare finds in Central Asia and southern Siberia, and occasional low-frequency reports from South Asia—patterns consistent with recent maritime-mediated dispersal and later admixture.

Historical and Cultural Significance

F1B1A1A1's temporal and spatial pattern ties it to late Holocene coastal economies and the Austronesian expansion. The timing (~3.5 kya) overlaps with archaeological and linguistic evidence for Austronesian dispersals out of Taiwan and rapid settlement of Island Southeast Asia and parts of Near Oceania. In this context, F1B1A1A1 likely rode on maritime movements of small-scale farming, fishing, and trading communities, becoming part of the maternal signature of many modern Austronesian-speaking populations.

Its presence in coastal East China and the Ryukyu Islands also suggests local coastal continuity and gene flow between mainland East Asia and island populations. Low-frequency occurrences in inland and highland groups reflect later contact, trade, and gene flow rather than primary origin points.

Ancient DNA evidence remains limited for this terminal branch (one documented archaeological hit in the available database), so most inferences rely on modern population patterns, phylogenetic branching and coalescent-based age estimates of the parent lineage.

Conclusion

F1B1A1A1 is a young, regionally informative mtDNA lineage that illustrates late-Holocene coastal and maritime demographic processes in East and Southeast Asia, including the Austronesian expansion into Island Southeast Asia and Near Oceania. Continued high-resolution mtDNA sequencing and ancient DNA sampling in coastal and island archaeological sites will refine its internal structure, geographical origins, and precise role in human migrations across maritime Asia.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 F1B1A1A1 Current ~4,000 years ago 🔶 Bronze Age 3,500 years 0 0 0
2 F1B1A1A ~4,000 years ago 🔶 Bronze Age 3,500 years 1 0 1
3 F1B1A1 ~4,000 years ago 🔶 Bronze Age 4,500 years 1 3 0
4 F1B1A ~6,000 years ago 🪨 Chalcolithic 6,000 years 1 5 17
5 F1B1 ~9,000 years ago 🌾 Neolithic 9,000 years 5 27 0
6 F1B ~15,000 years ago 🏹 Mesolithic 15,000 years 1 27 8
7 F1 ~25,000 years ago 🦴 Paleolithic 25,000 years 7 115 10
8 N ~60,000 years ago 🦴 Paleolithic 60,000 years 15 15,452 13
9 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 11 17,621 6
10 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5

Subclades (0)

Terminal branch - no known subclades

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

East to Southeast Asia

Modern Distribution

The populations where mtDNA haplogroup F1B1A1A1 is found include:

  1. Han Chinese and other coastal East Chinese populations
  2. Japanese (including Ryukyu/Okinawan groups)
  3. Koreans (occasional, low frequency)
  4. Vietnamese and other mainland Southeast Asian groups (Thai, Lao)
  5. Filipinos and other Austronesian-speaking populations in Island Southeast Asia
  6. Indonesians and Malays (particularly eastern Indonesian islands)
  7. Austronesian-derived populations in Near Oceania (parts of Melanesia and Micronesia)
  8. Tibeto-Burman and Himalayan fringe groups (low to moderate frequency)
  9. Scattered Central Asian and southern Siberian groups (rare, low frequency)
  10. Occasional reports in South Asian populations (rare, very low frequency)
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Haplogroup F1B1A1A1

Your mtDNA haplogroup emerged in East to Southeast Asia

East to Southeast Asia
~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup F1B1A1A1

Cultural Heritage

These ancient cultures have been linked to haplogroup F1B1A1A1 based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Chinese Neolithic Dornod Culture Early Buryat Lena River Culture Mongolian Neolithic Northern Mongolian Culture Saka Shamanka Culture Slab Grave Culture Songshugou Culture Three Kingdoms Period Transbaikal Culture
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

Top 50 ancient DNA samples directly related to haplogroup F1B1A1A1 or parent clades

50 / 50 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual I3736 from Taiwan, dated 1 CE - 800 CE
I3736
Taiwan Iron Age Taiwan 1 CE - 800 CE Taiwanese Iron F4b1 Direct
Portrait of ancient individual I3731 from Taiwan, dated 1 CE - 800 CE
I3731
Taiwan Iron Age Taiwan 1 CE - 800 CE Taiwanese Iron F3b1 Direct
Portrait of ancient individual I8074 from Taiwan, dated 1 CE - 800 CE
I8074
Taiwan Iron Age Taiwan 1 CE - 800 CE Taiwanese Iron F3b1a-a Direct
Portrait of ancient individual I8080 from Taiwan, dated 1 CE - 800 CE
I8080
Taiwan Iron Age Taiwan 1 CE - 800 CE Taiwanese Iron F3b1a-a Direct
Portrait of ancient individual I14926 from Taiwan, dated 1 CE - 800 CE
I14926
Taiwan Iron Age Taiwan 1 CE - 800 CE Taiwanese Iron F4b1 Direct
Portrait of ancient individual I14933 from Taiwan, dated 1 CE - 800 CE
I14933
Taiwan Iron Age Taiwan 1 CE - 800 CE Taiwanese Iron F3b1a Direct
Portrait of ancient individual I15160 from Taiwan, dated 1 CE - 800 CE
I15160
Taiwan Iron Age Taiwan 1 CE - 800 CE Taiwanese Iron F4b1 Direct
Portrait of ancient individual I15159 from Taiwan, dated 1 CE - 800 CE
I15159
Taiwan Iron Age Taiwan 1 CE - 800 CE Taiwanese Iron F4b1 Direct
Portrait of ancient individual I8079 from Taiwan, dated 1 CE - 800 CE
I8079
Taiwan Iron Age Taiwan 1 CE - 800 CE Taiwanese Iron F3b1 Direct
Portrait of ancient individual DA104 from Kyrgyzstan, dated 1 CE - 700 CE
DA104
Kyrgyzstan The Hun Period in Kyrgyzstan 1 CE - 700 CE Hunnic Period F1b1-a Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 100 ancient DNA samples carrying haplogroup F1B1A1A1

Time Period Filter
All Time Periods
Showing all samples
Each marker represents an ancient individual
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution of carriers by country of origin

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-16
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.