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mtDNA Haplogroup • Maternal Lineage

M

mtDNA Haplogroup M

~60,000 years ago
South or Southeast Asia
11 subclades
41 ancient samples
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Chapter I

The Story

The journey of mtDNA haplogroup M

Origins and Evolution

mtDNA haplogroup M is a primary non-African maternal lineage that branches from African-derived haplogroup L3 shortly after the Out-of-Africa dispersal. Most population-genetic and phylogenetic analyses place the origin of M roughly between 50–70 kya, with many estimates clustering around ~55–65 kya, consistent with an early Upper Paleolithic coastal or near-coastal expansion into South and Southeast Asia. M diversified rapidly into numerous regional sublineages as modern humans spread across Asia and into Oceania.

Subclades

Haplogroup M contains many major downstream clades that have distinct geographic and historical signatures. Important descendant lineages include (but are not limited to): C, D, E, G, Z, M1, F-derived clusters, and numerous South and Southeast Asian-specific M branches. Some of these (e.g., C and D) are prominent in northern Eurasia and the Americas, whereas M1 is notable for its presence in North Africa and is generally interpreted as a Paleolithic back-migration into Africa. Other M subclades are highly diverse and endemic to South Asia, the Andaman Islands, Island Southeast Asia, and Near Oceania.

Geographical Distribution

Haplogroup M and its derivatives are widespread across Asia and Oceania with varying frequencies: very high diversity and frequency in South Asia and parts of Southeast Asia, high frequencies in many indigenous populations of Oceania (including Papuans and Aboriginal Australians), substantial representation across East Asia (through certain M subclades), and presence in the Americas through descendant clades (notably C and D). A localized presence of M1 in North Africa reflects prehistoric back-migration events. In western Eurasia M is generally rare except for specific regional introductions and recent gene flow.

Historical and Cultural Significance

Because M diversified early after the Out-of-Africa dispersal, it marks some of the earliest human expansions into South and Southeast Asia and the colonization of Near Oceania and Australia. Several M subclades trace migrations associated with the coastal dispersal model, and later M lineages were carried during the Austronesian expansion into Island Southeast Asia and Oceania. The presence of M-derived lineages (C and D) among Native American populations also links M to the founding maternal ancestry of many indigenous peoples of the Americas.

Conclusion

mtDNA haplogroup M is a foundational non-African maternal lineage whose deep time depth and widespread diversification make it central to reconstructing early modern human migrations across Asia, Oceania, and into the Americas. Its many regional subclades record both Pleistocene dispersals and later Holocene demographic events, and continued sampling and ancient DNA studies keep refining its internal phylogeny and geographic history.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 M Current ~60,000 years ago 🦴 Paleolithic 60,000 years 11 1,200 41
2 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 11 17,621 6
3 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5

Siblings (10)

Other branches from the same parent haplogroup

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

South or Southeast Asia

Modern Distribution

The populations where mtDNA haplogroup M is found include:

  1. Indigenous Australians (Aboriginal groups)
  2. Papuan and Melanesian populations
  3. Andaman Islanders (Onge, Jarawa and related groups)
  4. South Asian populations (Dravidian and Indo-Aryan groups across India, Pakistan, Sri Lanka)
  5. East Asian populations (Han Chinese, Japanese, Korean and other East Asian groups via specific M subclades)
  6. Southeast Asian populations (Austroasiatic, Tai-Kadai, Austronesian groups)
  7. Native American groups (founding lineages such as haplogroups C and D derived from M)
  8. Central Asian and Siberian populations (various M-derived clades)
  9. North African populations (primarily M1 in Berber, Egyptian and neighboring groups)
  10. Himalayan/Tibetan and highland populations of South-Central Asia
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~70k years ago

Out of Africa

Major migration of modern humans out of Africa

~60k years ago

Haplogroup M

Your mtDNA haplogroup emerged in South or Southeast Asia

South or Southeast Asia
~50k years ago

Upper Paleolithic

Advanced tool-making, art, and cultural explosion

~20k years ago

Last Glacial Maximum

Peak of the last ice age, populations isolated

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup M

Cultural Heritage

These ancient cultures have been linked to haplogroup M based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Andamanese British Neolithic Goyet Cave Gravettian Katelai Culture Ostuni Culture Spanish Gravettian Udegram Culture Unai Culture
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

Top 41 ancient DNA samples directly related to haplogroup M or parent clades

41 / 41 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual R67 from Italy, dated 100 CE - 300 CE
R67
Italy Imperial Rome 100 CE - 300 CE Roman Empire M Direct
Portrait of ancient individual C3315 from China, dated 152 BCE - 23 BCE
C3315
China Iron Age Caishichang, Xinjiang, China 152 BCE - 23 BCE Caishichang Culture M3 Direct
Portrait of ancient individual I6549 from Pakistan, dated 165 BCE - 2 BCE
I6549
Pakistan Butkara: Iron Age Religious and Cultural Center in Swat Valley, Pakistan 165 BCE - 2 BCE Butkara Culture M30 Direct
Portrait of ancient individual I6552 from Pakistan, dated 200 BCE - 1 BCE
I6552
Pakistan Butkara: Iron Age Religious and Cultural Center in Swat Valley, Pakistan 200 BCE - 1 BCE Butkara Culture M30 Direct
Portrait of ancient individual YPN001 from Thailand, dated 200 CE - 450 CE
YPN001
Thailand Yappa Nhae Log Coffin Culture Iron Age 200 CE - 450 CE Yappa Nhae M55 Direct
Portrait of ancient individual YPN019 from Thailand, dated 200 CE - 450 CE
YPN019
Thailand Yappa Nhae Log Coffin Culture Iron Age 200 CE - 450 CE Yappa Nhae M69 Direct
Portrait of ancient individual YPN020 from Thailand, dated 200 CE - 450 CE
YPN020
Thailand Yappa Nhae Log Coffin Culture Iron Age 200 CE - 450 CE Yappa Nhae M74 Direct
Portrait of ancient individual C388 from China, dated 223 CE - 375 CE
C388
China Historical Period Hetian, Xinjiang, China 223 CE - 375 CE Hetian Culture M3 Direct
Portrait of ancient individual In662 from Indonesia, dated 353 BCE - 57 BCE
In662
Indonesia Late Neolithic to Iron Age Indonesia 353 BCE - 57 BCE Transitional Indonesian M20 Direct
Portrait of ancient individual C3314 from China, dated 395 BCE - 209 BCE
C3314
China Iron Age Caishichang, Xinjiang, China 395 BCE - 209 BCE Caishichang Culture M3 Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 41 ancient DNA samples carrying haplogroup M

Time Period Filter
All Time Periods
Showing all samples
Each marker represents an ancient individual
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution of carriers by country of origin

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-09
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.