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mtDNA Haplogroup • Maternal Lineage

H46B

mtDNA Haplogroup H46B

~4,000 years ago
Western Europe (Iberian/Atlantic fringe)
0 subclades
1 ancient samples
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Chapter I

The Story

The journey of mtDNA haplogroup H46B

Origins and Evolution

H46B is a downstream branch of mtDNA haplogroup H46, itself derived from the broader H4 lineage. Given the inferred origin of H46 on the Iberian/Atlantic fringe in the early Holocene, H46B is best interpreted as a later, localized derivative that likely formed after the primary diversification of H46. The estimated time to origin (around 4.5 kya) places H46B formation in the later Neolithic to Bronze Age transition, a period characterized by regional demographic shifts and maritime contacts along the Atlantic façade.

Genetically, H46B carries the defining H46 motifs plus additional private mutations that mark it as a distinct subclade. Its phylogenetic placement within H4→H46 makes it part of the Western European H-cluster that expanded and restructured throughout the Holocene, especially among populations on the Atlantic seaboard.

Subclades

As a relatively rare and recently described branch, H46B currently has limited recognized downstream diversity in published datasets. Where deeper substructure exists, it remains at very low frequency and may be represented by singletons or very small clusters in modern population screens. Continued high-resolution sequencing of mitogenomes in Iberian and Atlantic populations could reveal further sub-branches.

Geographical Distribution

The geographic signal for H46B mirrors that of its parent but at lower frequency. It is most often detected in:

  • Iberia (Spain and Portugal), including some Basque individuals, reflecting the broader H46 concentration there.
  • Atlantic France and southwestern France, consistent with maritime continuity along the Atlantic fringe.
  • British Isles (England, Ireland, Scotland) at sporadic low frequency, plausibly introduced via later movements across the channel or earlier Atlantic contacts.
  • Southern Europe (Italy, Sardinia) and nearby Mediterranean regions in scattered occurrences, likely reflecting long-distance maritime connections.
  • North Africa (Maghreb) and parts of the Near East only at very low frequency, probably the result of historical Mediterranean exchange rather than a primary centre of origin.

Ancient DNA evidence for H46B is currently very limited or absent in published ancient datasets; H46 (the parent) has been found in at least one ancient sample, but H46B-specific ancient occurrences remain scarce, which is consistent with its low modern frequency.

Historical and Cultural Significance

Because H46B is rare and largely localized, its cultural associations are indirect and inferred from archaeological and demographic patterns of the Atlantic and Iberian regions. Possible connections include:

  • Atlantic Neolithic and later coastal societies: continuity of maternal lineages along the Atlantic coast since the Neolithic likely provided the substrate from which H46 and later H46B persisted.
  • Bell Beaker period and Bronze Age movements: the timing of H46B's origin overlaps with the rise and maritime spread of Bell Beaker-associated groups and subsequent Bronze Age interactions; this could explain patchy dissemination along coastal and island routes.
  • Historic Mediterranean connectivity: Roman, Phoenician, and later medieval seafaring and trade could account for isolated occurrences in the central Mediterranean and North Africa.

Because the haplogroup is not diagnostic of any single archaeological culture and occurs at low frequency, its presence is best interpreted as a marker of localized maternal continuity with occasional long-range contacts rather than a driver of major demographic turnovers.

Conclusion

H46B is a low-frequency western European mtDNA subclade that most plausibly arose on the Iberian/Atlantic fringe in the later Neolithic–Bronze Age interval. Its rarity and limited representation in ancient DNA mean that inferences must remain cautious: H46B most likely represents a regional maternal lineage that persisted through Holocene coastal population dynamics and was sporadically transported by later maritime and overland contacts. Targeted mitogenome sequencing in Atlantic and Iberian populations could clarify its internal diversity and historical movements.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 H46B Current ~4,000 years ago 🔶 Bronze Age 4,500 years 0 0 1
2 H46 ~8,000 years ago 🌾 Neolithic 7,500 years 1 7 0
3 H4 ~9,000 years ago 🌾 Neolithic 9,000 years 13 264 14
4 H ~25,000 years ago 🦴 Paleolithic 25,000 years 9 6,551 991
5 HV ~30,000 years ago 🦴 Paleolithic 30,000 years 10 7,905 228
6 R ~60,000 years ago 🦴 Paleolithic 60,000 years 12 10,987 57
7 N ~60,000 years ago 🦴 Paleolithic 60,000 years 15 15,452 13
8 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 11 17,621 6
9 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5

Subclades (0)

Terminal branch - no known subclades

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

Western Europe (Iberian/Atlantic fringe)

Modern Distribution

The populations where MTDNA haplogroup H46B is found include:

  1. Iberian populations (Spain, Portugal, including some Basque groups)
  2. Western Europeans (south-western France and Atlantic France)
  3. British Isles populations (England, Scotland, Ireland at low frequency)
  4. Southern Europeans (Italy, Sardinia; sporadic occurrences)
  5. Near Eastern populations (low frequencies in Anatolia and the Levant)
  6. North African populations (low frequencies in the Maghreb, likely via Mediterranean contacts)
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~4k years ago

Haplogroup H46B

Your mtDNA haplogroup emerged in Western Europe (Iberian/Atlantic fringe)

Western Europe (Iberian/Atlantic fringe)
~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup H46B

Cultural Heritage

These ancient cultures have been linked to haplogroup H46B based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Anatolian Neolithic Bell Beaker Croatian Bronze Age Iron Gates Culture Late Bronze Age Armenian Linear Pottery Culture Natufian Shanidar Culture Sicilian Iron Age Starcevo Culture
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

Top 1 ancient DNA samples directly related to haplogroup H46B or parent clades

1 / 1 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual I0797 from Germany, dated 5500 BCE - 4850 BCE
I0797
Germany Early Neolithic Linear Pottery Culture, Germany 5500 BCE - 4850 BCE Linear Pottery Culture H46b Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 1 ancient DNA samples carrying haplogroup H46B

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Each marker represents an ancient individual
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution of carriers by country of origin

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-16
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.