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mtDNA Haplogroup • Maternal Lineage

M9A1B

mtDNA Haplogroup M9A1B

~9,000 years ago
East Asia
2 subclades
5 ancient samples
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Chapter I

The Story

The journey of mtDNA haplogroup M9A1B

Origins and Evolution

mtDNA haplogroup M9A1B is a subclade nested within the M9a lineage (via M9A1), a broader maternal clade that formed in East Asia during the late Pleistocene to early Holocene. As a derived branch of M9A1, M9A1B most plausibly originated in East Asia approximately 8–10 thousand years ago (early Holocene), during a period of regional demographic stabilization and cultural shifts associated with post‑glacial recolonization and the onset of local Holocene expansions.

Phylogenetically, M9A1B inherits the deep East Asian M9a signal but represents a later, more localized diversification. Its presence is consistent with maternal lineages that continued in situ in northern/central East Asia after the Last Glacial Maximum and differentiated further during the Neolithic and early Holocene.

Subclades

At present, published phylogenies indicate M9A1B is a derived clade of M9A1 but the internal structure (named downstream subclades) is incompletely resolved in the literature compared to larger haplogroups. Complete mitochondrial genome sequencing of individuals carrying M9A1B in different regions is needed to recover and validate any fine‑scale sublineages. Where available, sampled diversity suggests limited regional subbranches that reflect local founder events and drift in highland or island populations.

Geographical Distribution

M9A1B shows a distribution concentrated in East and Northeast Asia, with lower frequencies spilling into adjacent Central and northern Southeast Asian populations. Based on the phylogeographic pattern of its parent clade (M9A1), M9A1B is expected to be found at low-to-moderate frequencies among Han Chinese, Japanese, Koreans, Tibeto‑Burman highland groups, Mongolian/Inner Asian populations, and certain Central Asian groups (e.g., Uyghur, Kazakh) at reduced prevalence. Pockets of the haplogroup may also appear in northern Southeast Asian populations (Tai‑Kadai, Austroasiatic) and among some Siberian/northeastern Eurasian hunter‑gatherer groups at low frequency. The distribution indicates both long‑term regional continuity and later population movements that redistributed maternal lineages across East‑Central Asia.

Historical and Cultural Significance

Because M9A1B derives from an East Asian Holocene lineage, its presence informs studies of post‑glacial continuity, Neolithic demographic processes, and later cultural expansions across East Asia. In several regions M9a derivatives are observed in ancient DNA from Holocene hunter‑gatherers and early agricultural communities, implying that M9A1B may mark maternal ancestry involved in local transitions to farming or in the persistence of forager lineages absorbed by expanding agricultural populations.

Associations with archaeological contexts are necessarily cautious: M9A1B and related M9a derivatives plausibly occur among Jomon‑period individuals in Japan (maritime forager contexts), among Neolithic Yellow River basin populations (early millet farmers), and within populations tied to later regional cultural complexes where maternal continuity is evident. The haplogroup's pattern—localized high frequency in certain groups and low frequency in broad neighboring areas—also highlights the effects of founder events, genetic drift, and endogamy in mountain and island populations.

Conclusion

mtDNA M9A1B is best understood as a localized Holocene derivative of the broader M9a/M9A1 maternal radiation in East Asia. It contributes useful resolution for reconstructing maternal histories of East and Northeast Asia, but finer phylogenetic and temporal detail will depend on targeted whole‑mitogenome sampling of underrepresented populations and ancient DNA retrieval. Until broader sequencing and ancient samples refine its branching and timing, interpretations about precise migration routes should remain conservative and consider the complex demographic processes (continuity, admixture, drift) that shape regional mtDNA patterns.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 M9A1B Current ~9,000 years ago 🌾 Neolithic 9,000 years 2 6 5
2 M9A1 ~12,000 years ago 🌾 Neolithic 12,000 years 2 19 0
3 M9A ~22,000 years ago 🏹 Mesolithic 22,000 years 1 20 1
4 M9 ~30,000 years ago 🦴 Paleolithic 30,000 years 1 20 0
5 M ~60,000 years ago 🦴 Paleolithic 60,000 years 11 1,200 41
6 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 11 17,621 6
7 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5

Siblings (1)

Other branches from the same parent haplogroup

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

East Asia

Modern Distribution

The populations where mtDNA haplogroup M9A1B is found include:

  1. Han Chinese
  2. Japanese
  3. Korean
  4. Tibetan and Tibetan‑adjacent highland groups
  5. Mongolian and Inner Asian populations
  6. Central Asian groups (e.g., Kazakh, Uyghur — low to moderate frequency)
  7. Northern Southeast Asian populations (e.g., some Tai‑Kadai and Austroasiatic groups)
  8. Siberian and northeastern Eurasian hunter‑gatherer groups (low frequency)
  9. Regional minorities and isolated groups across East‑Central Asia
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~9k years ago

Haplogroup M9A1B

Your mtDNA haplogroup emerged in East Asia

East Asia
~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup M9A1B

Cultural Heritage

These ancient cultures have been linked to haplogroup M9A1B based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Dulan-Wayan Goyet Cave Late Iron Age Culture Late Xiongnu Longsangquduo Culture Mebrak Culture Red Deer Cave Samdzong Culture Sukhbaatar Culture Tibetan Plateau Culture
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

Top 5 ancient DNA samples directly related to haplogroup M9A1B or parent clades

5 / 5 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual C5173 from China, dated 601 BCE - 758 BCE
C5173
China Tibetan Plateau Culture 601 BCE - 758 BCE Tibetan Plateau Culture M9a1b1 Direct
Portrait of ancient individual BB2011 from China, dated 605 CE - 665 CE
BB2011
China Dulan-Wayan Culture 605 CE - 665 CE Dulan-Wayan M9a1b1 Direct
Portrait of ancient individual KS20_KS25 from Nepal, dated 800 BCE - 1 BCE
KS20_KS25
Nepal Late Iron Age Nepal 800 BCE - 1 BCE Late Iron Age Culture M9a1b1 Direct
Portrait of ancient individual M241 from Nepal, dated 800 BCE - 150 CE
M241
Nepal Late Iron Age to Early Middle Kingdoms Mebrak, Mustang, Nepal 800 BCE - 150 CE Mebrak Culture M9a1b1 Direct
Portrait of ancient individual ZAY001 from Mongolia, dated 1000 CE - 1500 CE
ZAY001
Mongolia Late Medieval Sukhbaatar, Mongolia 1000 CE - 1500 CE Sukhbaatar Culture M9a1b2 Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 5 ancient DNA samples carrying haplogroup M9A1B

Time Period Filter
All Time Periods
Showing all samples
Each marker represents an ancient individual
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution of carriers by country of origin

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-16
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.