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mtDNA Haplogroup • Maternal Lineage

H13A1A2

mtDNA Haplogroup H13A1A2

~4,000 years ago
Near East / Caucasus
1 subclades
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Chapter I

The Story

The journey of mtDNA haplogroup H13A1A2

Origins and Evolution

mtDNA haplogroup H13A1A2 is a subclade of H13A1A, itself a branch of the broader West Eurasian haplogroup H13. H13 lineages are generally associated with post‑glacial and early Holocene expansions from refugial areas in the Near East and Caucasus. Given the parent clade H13A1A is estimated to have arisen around the early Holocene (~7 kya) in the Near East/Caucasus, H13A1A2 most plausibly represents a later, more localized split that formed in the late Neolithic to Early Bronze Age (roughly 4–5 kya). The age estimate and phylogenetic position suggest H13A1A2 is a relatively young, regionally restricted maternal lineage derived from earlier Near Eastern/Caucasus H13 diversity.

Subclades

At present H13A1A2 is a narrowly defined downstream branch; depending on the depth of sequencing and sample coverage there may be private or very local subclades identifiable by additional mutations. Large population surveys have not yet resolved widely distributed named subclades beneath H13A1A2, so most diversity is observed as singletons or small clusters in regional datasets. As more complete mitogenomes are published, additional internal structure may be discovered within H13A1A2 reflecting local demographic events.

Geographical Distribution

H13A1A2 is concentrated in and around the Near East and Caucasus and appears more rarely farther west and north. Modern population screening and available ancient DNA indicate the highest relative frequencies or densities of H13A1A‑derived lineages occur in:

  • The Caucasus (Armenia, Georgia, Azerbaijan) and adjacent Anatolia,
  • Anatolian/Turkish populations,
  • Northwestern Iran and neighboring Near Eastern groups,
  • The Levant at low to moderate frequencies,
  • Parts of the Balkans and southern Europe (Italy, Greece) at low frequencies,
  • Sporadic occurrences in Jewish maternal lineages (Ashkenazi and some Sephardic records), and
  • Low-frequency detections in central/eastern and western Europe, often in modern populations or isolated ancient samples.

A small number of ancient DNA finds have captured H13A1A‑type lineages in archaeological contexts of the Near East and Europe; H13A1A2 specifically is represented in a limited set of ancient mitogenomes, consistent with a pattern of localized persistence and occasional long‑distance dispersal.

Historical and Cultural Significance

H13A1A2's phylogeographic pattern aligns with broader maternal signals of post‑glacial recolonization and later Neolithic to Bronze Age demographic processes originating in the Near East/Caucasus. It likely reflects:

  • Neolithic farmer expansions from Anatolia and the Near East that carried diverse H lineages into southeastern Europe.
  • Local Bronze Age dynamics in the Caucasus and Anatolia (for example cultural horizons such as Kura‑Araxes and related regional networks) that could have amplified or redistributed specific maternal lineages.
  • Later historical movements (trade, migration, diasporas) that produced sporadic occurrences in Jewish populations and across Europe.

Because H13A1A2 is not a high‑frequency pan‑European lineage, its significance is primarily as an indicator of regional maternal continuity and specific founder events rather than as a marker of large continent‑wide migrations.

Conclusion

H13A1A2 is a modestly aged, regionally focused mtDNA subclade rooted in the Near East/Caucasus. Its presence in modern Caucasus, Anatolia, the Levant and parts of southern and eastern Europe, together with limited ancient DNA hits, points to a history of local persistence from the late Neolithic/Bronze Age onward with episodic dispersal into neighboring regions. Continued mitogenome sequencing and expanded ancient DNA sampling will refine the internal branching, age estimates, and precise archaeological associations of this lineage.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 H13A1A2 Current ~4,000 years ago 🔶 Bronze Age 4,500 years 1 23 0
2 H13A1A ~7,000 years ago 🌾 Neolithic 7,000 years 4 79 45
3 H13A1 ~9,000 years ago 🌾 Neolithic 9,000 years 2 89 0
4 H13A ~10,000 years ago 🌾 Neolithic 10,000 years 2 140 3
5 H13 ~12,000 years ago 🌾 Neolithic 12,000 years 3 181 0
6 H1 ~15,000 years ago 🏹 Mesolithic 15,000 years 28 2,656 74
7 H ~25,000 years ago 🦴 Paleolithic 25,000 years 9 6,551 991
8 HV ~30,000 years ago 🦴 Paleolithic 30,000 years 10 7,905 228
9 R ~60,000 years ago 🦴 Paleolithic 60,000 years 12 10,987 57
10 N ~60,000 years ago 🦴 Paleolithic 60,000 years 15 15,452 13
11 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 11 17,621 6
12 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5

Siblings (3)

Other branches from the same parent haplogroup

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

Near East / Caucasus

Modern Distribution

The populations where MTDNA haplogroup H13A1A2 is found include:

  1. Caucasus populations (Armenians, Georgians, Azeris)
  2. Anatolian / Turkish populations
  3. Northwestern Iran and adjacent Near Eastern groups
  4. Levantine populations (Lebanon, Syria) at low to moderate frequencies
  5. Balkan populations and Southern Europe (Italy, Greece) at low to moderate frequencies
  6. Ashkenazi and some Sephardic Jewish maternal lineages (sporadic occurrences)
  7. Central and Eastern European populations at low frequencies
  8. Western European populations sporadically and in ancient contexts
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~4k years ago

Haplogroup H13A1A2

Your mtDNA haplogroup emerged in Near East / Caucasus

Near East / Caucasus
~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup H13A1A2

Cultural Heritage

These ancient cultures have been linked to haplogroup H13A1A2 based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Al-Andalus Armenian Late Bronze Armenian LBA-EIA Bell Beaker British Middle Bronze Age Hagios Charalambos Culture Langobard Culture Lassithi Culture Late Hellenistic Armenian Nordic Late Neolithic North Caucasus Culture Poltavka Sintashta Culture Unetice Culture
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

Top 50 ancient DNA samples directly related to haplogroup H13A1A2 or parent clades

50 / 50 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual R111 from Italy, dated 1 CE - 200 CE
R111
Italy Imperial Rome 1 CE - 200 CE Roman Empire H Direct
Portrait of ancient individual R113 from Italy, dated 1 CE - 200 CE
R113
Italy Imperial Rome 1 CE - 200 CE Roman Empire H26a1 Direct
Portrait of ancient individual R128 from Italy, dated 1 CE - 400 CE
R128
Italy Imperial Rome 1 CE - 400 CE Roman Empire HV-b Direct
Portrait of ancient individual R1543 from Italy, dated 1 CE - 400 CE
R1543
Italy Imperial Rome 1 CE - 400 CE Roman Empire H1e Direct
Portrait of ancient individual R1545 from Italy, dated 1 CE - 400 CE
R1545
Italy Imperial Rome 1 CE - 400 CE Roman Empire H8c Direct
Portrait of ancient individual R37 from Italy, dated 1 CE - 400 CE
R37
Italy Imperial Rome 1 CE - 400 CE Roman Empire HV Direct
Portrait of ancient individual R41 from Italy, dated 1 CE - 400 CE
R41
Italy Imperial Rome 1 CE - 400 CE Roman Empire H5a1 Direct
Portrait of ancient individual R43 from Italy, dated 1 CE - 400 CE
R43
Italy Imperial Rome 1 CE - 400 CE Roman Empire H7f Direct
Portrait of ancient individual R49 from Italy, dated 1 CE - 400 CE
R49
Italy Imperial Rome 1 CE - 400 CE Roman Empire H1u Direct
Portrait of ancient individual R75 from Italy, dated 1 CE - 200 CE
R75
Italy Imperial Rome 1 CE - 200 CE Roman Empire H14a Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 100 ancient DNA samples carrying haplogroup H13A1A2

Time Period Filter
All Time Periods
Showing all samples
Each marker represents an ancient individual
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution of carriers by country of origin

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-16
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.