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mtDNA Haplogroup • Maternal Lineage

H3H3

mtDNA Haplogroup H3H3

~10,000 years ago
Iberian Peninsula / Atlantic Europe
0 subclades
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Chapter I

The Story

The journey of mtDNA haplogroup H3H3

Origins and Evolution

mtDNA haplogroup H3H is a descendant sublineage of the broader H3 clade, itself a prominent descendant of haplogroup H — the most common maternal lineage in modern Europe. H3 is widely interpreted as a post‑glacial expansion lineage that increased in frequency after the Last Glacial Maximum as people moved northward from southwestern European refugia. H3H likely arose on the Atlantic/Iberian margin in the Early Holocene (around 10 kya) as a localized branch of this broader expansion. Its phylogenetic position as a subclade of H3 and its restricted geographic signal are consistent with origin through a founder effect or localized diversification in a refugial or early post‑glacial settlement area.

Subclades (if applicable)

H3H is a minor, regionally defined subclade within H3. Compared with some larger H3 sublineages, H3H shows relatively low internal diversity in modern samples and only limited representation in published ancient DNA datasets (reported in one archaeological sample in the referenced database). This pattern — restricted diversity and low sample counts — is consistent with a localized origin and modest subsequent population growth. Where further sequencing data are available, H3H may split into small branches reflecting micro‑regional differentiation along the Atlantic margin, but at present it is best recognized as a discrete H3 sublineage with few well‑documented downstream clades.

Geographical Distribution

H3H is most often detected at low to moderate frequencies in populations along the Atlantic façade of Europe, with the highest concentrations in the Iberian Peninsula (including the Basque region) and adjacent Atlantic France. It occurs at lower frequencies in the British Isles and other parts of Western Europe, and at sporadic low frequencies in southern Europe (including some parts of Italy and Sardinia). There are also occasional occurrences in Northwest Africa (Maghreb), likely reflecting prehistoric and historic gene flow across the western Mediterranean, and very low frequencies in parts of the Near East/Anatolia attributable to the broad dispersal of haplogroup H lineages. The presence of H3H in a single documented ancient sample supports continuity of this lineage in archaeological contexts but indicates it has not been a major mtDNA contributor in the ancient aDNA record sampled so far.

Historical and Cultural Significance

Because H3H appears to have a post‑glacial origin on the Atlantic margin, it is often interpreted as part of the maternal legacy of Mesolithic and early Holocene populations in southwestern Europe. Over subsequent millennia H3H would have been integrated into farming communities during the Neolithic and persisted through later cultural transformations. It is plausible to find H3H among individuals associated with Atlantic Neolithic contexts and, later, among diverse populations of the Bronze Age and historic periods of the Atlantic fringe. The haplogroup's relative enrichment in some Basque and Iberian samples has made it one of several maternal markers cited in studies of long‑term regional continuity on the Iberian Atlantic coast, though its moderate frequency and patchy distribution caution against overinterpreting any single haplogroup as tied to a single cultural label.

Conclusion

H3H is a geographically informative, regionally concentrated mtDNA subclade reflecting post‑glacial maternal re‑expansion from southwestern Europe, most strongly associated with the Iberian and Atlantic margins. Its limited diversity and low-to-moderate modern frequencies — together with scant ancient DNA occurrences to date — indicate a localized origin with persistence rather than a major continent‑wide radiation. Additional complete mitochondrial genomes from modern and archaeological contexts will clarify finer substructure and allow more precise reconstructions of H3H's demographic history.

Key Points

  • Origins and Evolution
  • Subclades (if applicable)
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 H3H3 Current ~10,000 years ago 🌾 Neolithic 10,000 years 0 2 0
2 H3H ~10,000 years ago 🌾 Neolithic 10,000 years 3 24 14
3 H3 ~10,000 years ago 🌾 Neolithic 10,000 years 25 340 23
4 H ~25,000 years ago 🦴 Paleolithic 25,000 years 9 6,551 991
5 HV ~30,000 years ago 🦴 Paleolithic 30,000 years 10 7,905 228
6 R ~60,000 years ago 🦴 Paleolithic 60,000 years 12 10,987 57
7 N ~60,000 years ago 🦴 Paleolithic 60,000 years 15 15,452 13
8 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 11 17,621 6
9 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5

Subclades (0)

Terminal branch - no known subclades

Siblings (2)

Other branches from the same parent haplogroup

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

Iberian Peninsula / Atlantic Europe

Modern Distribution

The populations where MTDNA haplogroup H3H is found include:

  1. Iberian populations (Spain, Portugal, including Basques)
  2. Western Europeans (France, Atlantic France, British Isles)
  3. Southern Europeans (parts of Italy, Sardinia at lower frequencies)
  4. Northwest Africa (Maghreb, lower frequencies due to historical/prehistoric gene flow)
  5. Near East / Anatolia (low frequencies, reflecting broader H presence and later movements)
  6. Modern populations in the Atlantic fringe and diaspora communities (variable, generally low to moderate)
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~10k years ago

Haplogroup H3H3

Your mtDNA haplogroup emerged in Iberian Peninsula / Atlantic Europe

Iberian Peninsula / Atlantic Europe
~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup H3H3

Cultural Heritage

These ancient cultures have been linked to haplogroup H3H3 based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Avar Culture Danish Medieval French Neolithic Ingrian Iron Age Culture La Tène Culture Lepenski Vir Culture Nordic Late Neolithic Saxon Culture Viking Culture Zealand Saxon
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

Top 50 ancient DNA samples directly related to haplogroup H3H3 or parent clades

50 / 50 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual R111 from Italy, dated 1 CE - 200 CE
R111
Italy Imperial Rome 1 CE - 200 CE Roman Empire H Direct
Portrait of ancient individual R113 from Italy, dated 1 CE - 200 CE
R113
Italy Imperial Rome 1 CE - 200 CE Roman Empire H26a1 Direct
Portrait of ancient individual R128 from Italy, dated 1 CE - 400 CE
R128
Italy Imperial Rome 1 CE - 400 CE Roman Empire HV-b Direct
Portrait of ancient individual R1543 from Italy, dated 1 CE - 400 CE
R1543
Italy Imperial Rome 1 CE - 400 CE Roman Empire H1e Direct
Portrait of ancient individual R1545 from Italy, dated 1 CE - 400 CE
R1545
Italy Imperial Rome 1 CE - 400 CE Roman Empire H8c Direct
Portrait of ancient individual R37 from Italy, dated 1 CE - 400 CE
R37
Italy Imperial Rome 1 CE - 400 CE Roman Empire HV Direct
Portrait of ancient individual R41 from Italy, dated 1 CE - 400 CE
R41
Italy Imperial Rome 1 CE - 400 CE Roman Empire H5a1 Direct
Portrait of ancient individual R43 from Italy, dated 1 CE - 400 CE
R43
Italy Imperial Rome 1 CE - 400 CE Roman Empire H7f Direct
Portrait of ancient individual R49 from Italy, dated 1 CE - 400 CE
R49
Italy Imperial Rome 1 CE - 400 CE Roman Empire H1u Direct
Portrait of ancient individual R75 from Italy, dated 1 CE - 200 CE
R75
Italy Imperial Rome 1 CE - 200 CE Roman Empire H14a Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 100 ancient DNA samples carrying haplogroup H3H3

Time Period Filter
All Time Periods
Showing all samples
Each marker represents an ancient individual
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution of carriers by country of origin

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-16
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.