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mtDNA Haplogroup • Maternal Lineage

H13A2A

mtDNA Haplogroup H13A2A

~5,000 years ago
Near East / Caucasus
0 subclades
12 ancient samples
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Chapter I

The Story

The journey of mtDNA haplogroup H13A2A

Origins and Evolution

H13A2A is a derived subclade of H13A2, itself a branch of haplogroup H13. The parent clade H13A2 is inferred to have arisen in the Near East / Caucasus around the early to mid‑Holocene (~7.5 kya). H13A2A likely emerged later, during the mid‑Holocene (estimated ~5 kya) as a localized mutation within populations of the Caucasus‑Anatolian corridor. Its evolution reflects the pattern seen in many West Eurasian mtDNA subclades: a regional origin followed by limited regional expansions and low‑frequency dispersals into neighboring areas.

Subclades

At present, H13A2A appears to be a relatively narrow and sparsely sampled subclade. Published and database sequences indicate only a few downstream lineages or private mutations derived from H13A2A, suggesting that it either experienced limited expansion or that many of its branching events remain unsampled in modern and ancient datasets. As ancient DNA sampling in the Caucasus and Anatolia increases, additional substructure within H13A2A may be revealed.

Geographical Distribution

H13A2A is concentrated in the Near East and Caucasus region with lower frequency occurrences extending into Anatolia, parts of the Levant, and southern Europe. The pattern is consistent with a Near Eastern/Caucasian origin and subsequent dispersal through overland contacts and demographic links between Anatolia, the Caucasus, and the Balkans. Modern population surveys and ancient DNA finds (the parent H13A2 is documented in multiple ancient contexts and H13A2A appears in a limited number of ancient and modern samples) show the haplogroup is:

  • Moderate to locally common in some Caucasus populations (e.g., Armenian and Georgian maternal lines), where founder effects and micro‑regional continuity preserve distinct maternal lineages.
  • Present at low to moderate frequencies in Anatolia and adjacent northwestern Iran.
  • Rare or sporadic in the Levant, the southern Balkans and Italy, and occasional occurrences in Jewish maternal lineages (Ashkenazi/Sephardic) likely reflect episodic gene flow or founder events.

Historical and Cultural Significance

Although not associated with any single pan‑Eurasian migration event, H13A2A's distribution aligns with several demographic processes in the Holocene:

  • Neolithic and post‑Neolithic farmer expansions: The broader H13A2 lineage likely entered or expanded within Anatolia and the Caucasus during or after the Neolithic; H13A2A may reflect a later, localized differentiation tied to regional farming populations.
  • Bronze Age regional dynamics: Mid‑Holocene cultural horizons in the Caucasus and Anatolia (including Chalcolithic to Bronze Age transitions and cultures such as Kura‑Araxes) could have amplified local maternal lineages like H13A2A through community‑level founder effects and mobility.
  • Minor dispersals into Europe: Low‑frequency occurrences in the Balkans and southern Europe are consistent with regular overland contacts, trade, and small‑scale migrations rather than large continent‑wide replacements.

In some modern genealogical datasets H13A2A appears in isolated lineages among Ashkenazi and other Jewish maternal lines; these occurrences are most plausibly due to historical admixture with Near Eastern/Caucasus maternal pools or local founder events in diaspora communities.

Conclusion

H13A2A is best understood as a regional West Eurasian maternal lineage with a Near Eastern/Caucasus origin in the mid‑Holocene. It preserves a signal of localized continuity and restricted expansion: relatively concentrated in the Caucasus and Anatolia, present sporadically farther west and north, and of interest for studies of micro‑regional maternal population history in the Near East, the Caucasus, and adjoining parts of Europe. Increased sampling, especially ancient DNA from the Caucasus and Anatolia, will clarify its internal structure and historical dynamics.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 H13A2A Current ~5,000 years ago 🔶 Bronze Age 5,000 years 0 11 12
2 H13A2 ~8,000 years ago 🌾 Neolithic 7,500 years 3 33 0
3 H13A ~10,000 years ago 🌾 Neolithic 10,000 years 2 140 3
4 H13 ~12,000 years ago 🌾 Neolithic 12,000 years 3 181 0
5 H1 ~15,000 years ago 🏹 Mesolithic 15,000 years 28 2,656 74
6 H ~25,000 years ago 🦴 Paleolithic 25,000 years 9 6,551 991
7 HV ~30,000 years ago 🦴 Paleolithic 30,000 years 10 7,905 228
8 R ~60,000 years ago 🦴 Paleolithic 60,000 years 12 10,987 57
9 N ~60,000 years ago 🦴 Paleolithic 60,000 years 15 15,452 13
10 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 11 17,621 6
11 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5

Subclades (0)

Terminal branch - no known subclades

Siblings (2)

Other branches from the same parent haplogroup

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

Near East / Caucasus

Modern Distribution

The populations where MTDNA haplogroup H13A2A is found include:

  1. Caucasus populations (Armenians, Georgians, Azeris)
  2. Anatolian / Turkish populations
  3. Northwestern Iran and adjacent Near Eastern groups
  4. Levantine populations (Lebanon, Syria) at low to moderate frequencies
  5. Balkan populations and Southern Europe (Greece, Italy) at low to moderate frequencies
  6. Ashkenazi and some Sephardic Jewish maternal lineages (sporadic occurrences)
  7. Central and Eastern European populations at low frequencies
  8. Western European populations sporadically and in ancient contexts
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~5k years ago

Haplogroup H13A2A

Your mtDNA haplogroup emerged in Near East / Caucasus

Near East / Caucasus
~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup H13A2A

Cultural Heritage

These ancient cultures have been linked to haplogroup H13A2A based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Catacomb Culture Croatian Bronze-Iron Transition Croatian Middle Bronze Age Early Medieval Serbian Hunnic Period Jierzankale Culture Katelai Culture Late Neolithic Azerbaijani Raja Gira Roopkund Culture Saidu Sharif Culture Tepe Anau
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

Top 12 ancient DNA samples directly related to haplogroup H13A2A or parent clades

12 / 12 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual I7717 from Pakistan, dated 406 BCE - 209 BCE
I7717
Pakistan Saidu Sharif Iron Age Complex in Swat Valley, Pakistan 406 BCE - 209 BCE Saidu Sharif Culture H13a2a Direct
Portrait of ancient individual DA385 from Kyrgyzstan, dated 415 CE - 575 CE
DA385
Kyrgyzstan The Hun Period in Kyrgyzstan 415 CE - 575 CE Hunnic Period H13a2a Direct
Portrait of ancient individual DA385 from Kyrgyzstan, dated 415 CE - 575 CE
DA385
Kyrgyzstan The Huns 415 CE - 575 CE H13a2a Direct
Portrait of ancient individual C1194 from China, dated 733 BCE - 397 BCE
C1194
China Iron Age Jierzankale, Xinjiang, China 733 BCE - 397 BCE Jierzankale Culture H13a2a Direct
Portrait of ancient individual I7036 from India, dated 774 CE - 993 CE
I7036
India Roopkund Skeletons A 774 CE - 993 CE Roopkund Culture H13a2a Direct
Portrait of ancient individual I15537 from Serbia, dated 800 CE - 1000 CE
I15537
Serbia Early Medieval Slavic Culture of Serbia 800 CE - 1000 CE Early Medieval Serbian H13a2a Direct
Portrait of ancient individual I12143 from Pakistan, dated 1000 BCE - 800 BCE
I12143
Pakistan The Pakistan Katelai Iron Age Culture 1000 BCE - 800 BCE Katelai Culture H13a2a Direct
Portrait of ancient individual I12143 from Pakistan, dated 1000 BCE - 800 BCE
I12143
Pakistan The SPGT Culture 1000 BCE - 800 BCE H13a2a Direct
Portrait of ancient individual I7716 from Pakistan, dated 1176 CE - 1264 CE
I7716
Pakistan Medieval Raja Gira 1176 CE - 1264 CE Raja Gira H13a2a Direct
Portrait of ancient individual I24344 from Croatia, dated 1500 BCE - 400 BCE
I24344
Croatia The Transition to Iron Age in Croatia 1500 BCE - 400 BCE Croatian Bronze-Iron Transition H13a2a Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 12 ancient DNA samples carrying haplogroup H13A2A

Time Period Filter
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Showing all samples
Each marker represents an ancient individual
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution of carriers by country of origin

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-16
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.