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mtDNA Haplogroup • Maternal Lineage

H31

mtDNA Haplogroup H31

~8,000 years ago
Iberian Peninsula / Atlantic Europe
1 subclades
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Chapter I

The Story

The journey of mtDNA haplogroup H31

Origins and Evolution

H31 is a daughter lineage of haplogroup H3, itself a descendant of the major West Eurasian lineage H. H3 likely expanded from southwestern/Atlantic Europe during the Early Holocene, and H31 most plausibly arose as a further split within that regional radiation. Age estimates for H31 are younger than H3 but still appreciable in the Holocene (on the order of several thousand years), consistent with a post‑glacial origin in or near the Iberian/Atlantic refugial zone and subsequent localized expansions along Atlantic Europe.

Subclades

H31 does not rank among the largest H subclades and is characterized by a few derived branches. Population and sequence surveys report several minor sublineages of H31 (reported in the literature as localized variants or named subclades in different databases), but none reach the broad continental distribution of major H clades such as H1. These small subclades can be informative for fine-scale maternal genealogies within Atlantic Europe and adjacent regions.

Geographical Distribution

H31 is primarily associated with the Atlantic/Iberian fringe and is found at low to moderate frequencies in Iberia and in scattered holdings across Western Europe. Typical observations include:

  • Southwest Europe (Iberia): the highest relative densities, especially in regions with strong continuity from post‑glacial and Mesolithic/Neolithic populations.
  • Atlantic France and the British Isles: lower but consistent presence reflecting coastal and Atlantic connections.
  • Sardinia and parts of Italy: occasional occurrences at low frequency, reflecting broader movement and drift among Mediterranean islands.
  • Northwest Africa: low-frequency occurrences that are best explained by prehistoric and historic gene flow across the western Mediterranean.
  • Near East/Anatolia and other parts of Europe: sporadic presence, typically at low frequency and usually attributable to later migrations or admixture.

Because H31 is not highly frequent, its signal is strongest in regional, high-resolution surveys rather than broad continental averages.

Historical and Cultural Significance

H31 is best interpreted as part of the post‑glacial re-expansion and later regional demographic dynamics that shaped the maternal gene pool of Atlantic Europe. It can appear in contexts associated with Atlantic Neolithic and later prehistoric cultures (for example, megalithic-building communities along the Atlantic façade) and in populations impacted by later Bronze Age and historical movements. H31 is not typically treated as a marker of a single archaeological complex but rather as one component of the maternal diversity that persisted and moved with populations in western Europe.

Genetic continuity of H3-derived lineages (including H31) in areas such as Iberia and the Atlantic fringe has been used to argue for long-term maternal continuity in some locales, and occasional detections in Northwest Africa reflect the long-standing maritime connections across the western Mediterranean.

Conclusion

mtDNA H31 is a modestly frequent descendant of H3 whose distribution and age are consistent with an origin in the Atlantic/Iberian post‑glacial refugium and subsequent regional spread. Because it is a relatively small subclade, H31 is most informative in regional population-genetic and genealogical studies, helping to resolve fine-scale maternal structure in western Europe and adjacent coastal regions.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 H31 Current ~8,000 years ago 🌾 Neolithic 7,500 years 1 27 0
2 H3 ~10,000 years ago 🌾 Neolithic 10,000 years 25 340 23
3 H ~25,000 years ago 🦴 Paleolithic 25,000 years 9 6,551 991
4 HV ~30,000 years ago 🦴 Paleolithic 30,000 years 10 7,905 228
5 R ~60,000 years ago 🦴 Paleolithic 60,000 years 12 10,987 57
6 N ~60,000 years ago 🦴 Paleolithic 60,000 years 15 15,452 13
7 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 11 17,621 6
8 L ~160,000 years ago 🦴 Paleolithic 160,000 years 7 18,987 5
Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

Iberian Peninsula / Atlantic Europe

Modern Distribution

The populations where MTDNA haplogroup H31 is found include:

  1. Iberian populations (Spain, Portugal, including Basques)
  2. Atlantic France and other Western European Atlantic populations
  3. British Isles (England, Wales, Ireland, Scotland) at low frequencies
  4. Sardinia and parts of Southern Europe at low frequencies
  5. Northwest Africa (Maghreb) at low frequencies due to trans‑Mediterranean gene flow
  6. Near East / Anatolia and wider Europe (sporadic, low frequency)
  7. Modern diaspora populations in the Americas and elsewhere (occasional detections)
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~7k years ago

Haplogroup H31

Your mtDNA haplogroup emerged in Iberian Peninsula / Atlantic Europe

Iberian Peninsula / Atlantic Europe
~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup H31

Cultural Heritage

These ancient cultures have been linked to haplogroup H31 based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Baalberge Culture French Neolithic Lepenski Vir Culture Middle Neolithic French Occitanie Neolithic Portuguese Neolithic Zealand Saxon
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

Top 50 ancient DNA samples directly related to haplogroup H31 or parent clades

50 / 50 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual R111 from Italy, dated 1 CE - 200 CE
R111
Italy Imperial Rome 1 CE - 200 CE Roman Empire H Direct
Portrait of ancient individual R113 from Italy, dated 1 CE - 200 CE
R113
Italy Imperial Rome 1 CE - 200 CE Roman Empire H26a1 Direct
Portrait of ancient individual R128 from Italy, dated 1 CE - 400 CE
R128
Italy Imperial Rome 1 CE - 400 CE Roman Empire HV-b Direct
Portrait of ancient individual R1543 from Italy, dated 1 CE - 400 CE
R1543
Italy Imperial Rome 1 CE - 400 CE Roman Empire H1e Direct
Portrait of ancient individual R1545 from Italy, dated 1 CE - 400 CE
R1545
Italy Imperial Rome 1 CE - 400 CE Roman Empire H8c Direct
Portrait of ancient individual R37 from Italy, dated 1 CE - 400 CE
R37
Italy Imperial Rome 1 CE - 400 CE Roman Empire HV Direct
Portrait of ancient individual R41 from Italy, dated 1 CE - 400 CE
R41
Italy Imperial Rome 1 CE - 400 CE Roman Empire H5a1 Direct
Portrait of ancient individual R43 from Italy, dated 1 CE - 400 CE
R43
Italy Imperial Rome 1 CE - 400 CE Roman Empire H7f Direct
Portrait of ancient individual R49 from Italy, dated 1 CE - 400 CE
R49
Italy Imperial Rome 1 CE - 400 CE Roman Empire H1u Direct
Portrait of ancient individual R75 from Italy, dated 1 CE - 200 CE
R75
Italy Imperial Rome 1 CE - 200 CE Roman Empire H14a Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 100 ancient DNA samples carrying haplogroup H31

Time Period Filter
All Time Periods
Showing all samples
Each marker represents an ancient individual
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution of carriers by country of origin

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-16
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.